Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0466.Seq
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22NY8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.96 
UniRef50_Q187Y3 Cluster: Putative membrane protein; n=2; Clostri...    35   2.2  
UniRef50_Q1N640 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q2NEB7 Cluster: Predicted membrane-associated Zn-depend...    33   6.7  
UniRef50_Q9KMF2 Cluster: Putative uncharacterized protein; n=11;...    33   8.9  

>UniRef50_Q22NY8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2114

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
 Frame = -3

Query: 444 LKVYQGALITKGFRLIIFLFQIYFVSFESLEKTS*IYQL--CLSLYKID*LKCSIKL*SV 271
           + VY+G +I    ++II+LF  + + +   +K + ++Q+   +S+  I  LK S      
Sbjct: 90  IAVYKGIIIVSFCQIIIYLFSDFQLRYYDEQKLNSVFQIIDMVSIVNIVNLKQSDTFSYA 149

Query: 270 MIIISKISLQFELLLPSCHRCLVQYQFVEVINKTLKSDLNTKLELFTMYVFNLFFYLSL 94
           + II+   + F  +   C   +  Y  ++ IN   +  ++T  E+  +Y F LF  + L
Sbjct: 150 IYIIAMSFMVFYFIYVGCLTIVTNY--LKEINDEFQKIISTINEILNLY-FTLFLNVFL 205


>UniRef50_Q187Y3 Cluster: Putative membrane protein; n=2;
           Clostridium difficile|Rep: Putative membrane protein -
           Clostridium difficile (strain 630)
          Length = 226

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 210 CLVQYQFVEVINKTLKSDLNTKLELFTMYVFNLFFYLSL 94
           CL+ YQ V +  K LK + N  + L  +Y+F L+ YL+L
Sbjct: 15  CLI-YQIVVIKRKNLKVEKNVMIHLVWVYIFLLYIYLAL 52


>UniRef50_Q1N640 Cluster: Putative uncharacterized protein; n=1;
           Oceanobacter sp. RED65|Rep: Putative uncharacterized
           protein - Oceanobacter sp. RED65
          Length = 558

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 450 PFSPGHPRSAGIPCPKKVRVIPGPILYEN 536
           P+ PG P S G P PKK+ V+P P  Y N
Sbjct: 226 PWRPGRPISLGHP-PKKIEVLPKPSSYPN 253


>UniRef50_Q2NEB7 Cluster: Predicted membrane-associated Zn-dependent
           protease; n=1; Methanosphaera stadtmanae DSM 3091|Rep:
           Predicted membrane-associated Zn-dependent protease -
           Methanosphaera stadtmanae (strain DSM 3091)
          Length = 429

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 243 QFELLLPSCHRCLVQYQFVEVINKTLKSDLN-TKLELFTMYVFNLFFYLSLVVIL 82
           ++   LP C RC +  +F  ++N     +LN   +E  T Y+ +LF  + +V+I+
Sbjct: 364 KYTKFLPGCIRCWISRRFNWILNFISHHELNDNTVEHITRYISSLFIVILVVLII 418


>UniRef50_Q9KMF2 Cluster: Putative uncharacterized protein; n=11;
           Vibrio cholerae|Rep: Putative uncharacterized protein -
           Vibrio cholerae
          Length = 115

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 631 PNLRQTPNSNTFIPRTTVIILPLLEGGFF 545
           P L+  P +NT+I R  + ILP L G FF
Sbjct: 68  PALKDHPAANTYISRVLIEILPALAGSFF 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,404,450
Number of Sequences: 1657284
Number of extensions: 14928349
Number of successful extensions: 34273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34252
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)