Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0466.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    30   0.28 
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    28   1.1  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   2.0  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   7.9  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 601 YSNSGFAASWASRHCPEGILILGKN 675
           YS    A+S+AS  CPEGI+ + KN
Sbjct: 754 YSAIDHASSFASEQCPEGIVAIQKN 778


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 204 VQYQFVEVINKTLKSDLNTKLELFTMYVFNLFFYLSLVVILIM 76
           +  QF+  I  ++ +    KL     Y+  LF ++S++VIL M
Sbjct: 192 IAIQFIHFILASMPTKYIAKLNSVGTYLNTLFLFISMIVILAM 234


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 455 FPWTSPIGWHSMPKKGSGNSW 517
           FPW SPI  +SM    +G++W
Sbjct: 412 FPWMSPIVGNSMVTVANGHNW 432


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 492 PKKVRVIPGPILYENFKKKKPPSNRGK-IITVV 587
           PK+V VIP  ++ ENF  +  PS   K  +T+V
Sbjct: 164 PKRVSVIPNALVAENF--QPDPSKASKDFLTIV 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,837
Number of Sequences: 5004
Number of extensions: 62196
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)