Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0466.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001     30   2.0  
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359     29   4.7  
06_03_1467 + 30353122-30353937                                         29   4.7  

>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
          Length = 708

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 432 GKPLRWPFSPGHPRSAGIPCPKKVRVIPGPILYENFKKKKPPSNRGKIITVVRG 593
           GKPL  P  P  P  AG P P   R   G  +  + KKKK  S        V G
Sbjct: 218 GKPLSRPCEPFFPSPAGAPTPTDGRGSGGGSVPVSEKKKKKLSGAAVAAIAVGG 271


>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
          Length = 514

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 435 KPLRWPFSPGHPRSAGIPCPKKVR 506
           KPL +P  P H RS G+P P+K +
Sbjct: 78  KPLAFPVGPYHARS-GVPAPEKAQ 100


>06_03_1467 + 30353122-30353937
          Length = 271

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 441 LRWPFSPGHPRSAGIPC 491
           +R PF+ GH RSA +PC
Sbjct: 1   MRRPFAAGHVRSASVPC 17


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,534,681
Number of Sequences: 37544
Number of extensions: 386137
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)