Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0466.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)           30   1.6  
SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1)                       29   3.6  
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    28   6.3  
SB_41937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
          Length = 474

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 461 WTSPIGWHSMPKKGSGNSWAH 523
           W  P G     K+GSGN+WAH
Sbjct: 91  WRYPKGQQFSQKRGSGNNWAH 111


>SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1)
          Length = 264

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 519 PILYENFKKKKPPSNRGKIITVVRGIKVFEFGVCR 623
           P  Y+     +PPS++GKI +V  GI++ E  V R
Sbjct: 134 PAPYKGKGPWEPPSHKGKIASVNEGIEIGELPVTR 168


>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 468 PRSAGIPCPKKVRVIPGPILYENFKKKKPPSNR 566
           PRSA I  PK   ++   + YEN    KP + +
Sbjct: 874 PRSADIHSPKSSTLVAATLRYENMLTSKPDTTK 906


>SB_41937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 521 GPRNYPNLFWAWNASR-SGMSRGKWPP 444
           GP + P+L W W A R  G  R + PP
Sbjct: 9   GPAHLPSLKWGWEARRIRGYERTRSPP 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,457,127
Number of Sequences: 59808
Number of extensions: 437169
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)