Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0466.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    29   4.2  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    29   4.2  
AF024490-1|AAB70308.1|  334|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    27   9.8  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    27   9.8  
AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 577 IILPLLEGGFFFLKFSYKMGPGITRTFFGHGMPADRGCPGENGHL 443
           I++P L+G  + L+ +  + PG TR   G G+P  +  P   G L
Sbjct: 264 IMIPTLDGADYRLQLNDVIKPGTTRRLTGKGLPNPKS-PSHRGDL 307


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 483 IPCPKKVRVIPGPI-LYENFKKKKPPSNRGKIITVVRGIKVFE 608
           +P  K  R +P  + +  +FK      N+GK+IT+V+ +K+ E
Sbjct: 341 LPSVKNARDLPIQLSMISSFKVSTSFDNKGKVITIVQCMKIAE 383


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -3

Query: 273 VMIIISKISLQFELLLPSCHRCL-VQYQFVEVINKTLKSDLNTKLELFTMYVFNLFFYL 100
           ++ I  K+SL+ +L L  C     + + FV V+NK L S +   L   TM+V NL FYL
Sbjct: 29  LIFIAKKVSLKPDLKLIYCRFVAEIFFHFVVVLNK-LYSIVG--LVSTTMFVKNLIFYL 84


>AF024490-1|AAB70308.1|  334|Caenorhabditis elegans Hypothetical
           protein C02H6.1 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 568 PLLEGGFFFLKFSYKMGPGITRTFFGHGMPADRGCPGENGHLKGLPRC 425
           P LEGG+      Y +     R F  H    ++ CP +    +G+ RC
Sbjct: 202 PFLEGGYNSGGAGYLLSNAAVRIFVEHLYHDEKRCPYDWAEDRGIARC 249


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 517 PGITRTFFGHGMPADRGCPGENGHLKGLPRCPNNQRF 407
           PG      G G   + G PG+NG + G P  P +Q +
Sbjct: 643 PGTRGQDGGPGYSGEAGAPGQNG-MDGYPGAPGDQGY 678


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 517  PGITRTFFGHGMPADRGCPGENGHLKGLPRCPNNQRF 407
            PG      G G   + G PG+NG + G P  P +Q +
Sbjct: 900  PGTRGQDGGPGYSGEAGAPGQNG-MDGYPGAPGDQGY 935


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 517  PGITRTFFGHGMPADRGCPGENGHLKGLPRCPNNQRF 407
            PG      G G   + G PG+NG + G P  P +Q +
Sbjct: 899  PGTRGQDGGPGYSGEAGAPGQNG-MDGYPGAPGDQGY 934


>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 426 ALITKGFRLIIFLFQIYFVSFESLEKTS*IYQLCLS 319
           +++ +GF  I  +F IY  SF   + T+ IY +C++
Sbjct: 206 SILIEGFIWIFPIFGIYSASFILFQVTTLIYYICIA 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,704
Number of Sequences: 27780
Number of extensions: 361978
Number of successful extensions: 1012
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)