Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0465.Seq
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            30   1.7  
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)               28   5.2  
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)                      27   9.1  
SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         27   9.1  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)                  27   9.1  

>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +2

Query: 17  QQSPHTAALPPRTTRIHNPP--TTPIRPNNST 106
           QQ PH     P T     PP  TTP +P N+T
Sbjct: 37  QQLPHNRTTTPTTPTTTTPPATTTPTKPTNTT 68


>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  TEQQSPHTAAL-PPRTTRIHNPPTTPIRPNNSTLTAMAV 124
           TE     T  L PP+TTR  NPPT  IRP N  L   ++
Sbjct: 709 TEGDGDATETLNPPQTTRQQNPPT--IRPVNHLLRQSSI 745


>SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
          Length = 165

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 496 LELQYSDLALNNFISIGHSLKPSHKSVIKPNVLSSSYFV 380
           L  +Y D  L+N I  G+ LK  HK  I   +L ++ F+
Sbjct: 47  LVFEYMDTDLHNVIKRGNILKDIHKRYIMYQLLKATKFI 85


>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 221 YWMYNRNKY*ISVVKIRLTRNTKTNYKMQEQ 313
           YW   +N+Y + + +  L RNT   Y +Q Q
Sbjct: 751 YWGSAKNRYQLEIPESALGRNTPDEYTLQSQ 781


>SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)
          Length = 138

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 11  TEQQSPHTAAL-PPRTTRIHNPPT 79
           TE+    T  L PP+TTR  NPPT
Sbjct: 83  TEEDGDATETLNPPQTTRQQNPPT 106


>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 26  PHTAALPPRTTRIHNPPTTP 85
           PH+AA  P   R H+P TTP
Sbjct: 808 PHSAASSPGCKRAHDPLTTP 827


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 2    TPVTEQQSPHTAALPPRTTRIH-NPPTTPIRPNNSTLTAMAV 124
            TP+    S       P TT I  +P TTPI+P+ ST +   +
Sbjct: 1304 TPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTSTTPI 1345


>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 11   TEQQSPHTAAL-PPRTTRIHNPPT 79
            TE+    T  L PP+TTR  NPPT
Sbjct: 1031 TEEDGDATETLNPPQTTRQQNPPT 1054


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,615
Number of Sequences: 59808
Number of extensions: 250515
Number of successful extensions: 834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)