Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0465.Seq
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58340.1 68418.m07305 expressed protein ; expression supporte...    29   2.4  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   5.6  
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct...    27   7.4  
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    27   7.4  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    27   7.4  

>At5g58340.1 68418.m07305 expressed protein ; expression supported
           by MPSS
          Length = 466

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +2

Query: 59  RIHNPPTTPIRPNNSTLTAMAVGDLFDCNRIKLTSL 166
           R HNP  +PI    + ++A+ +GD  DC ++K++S+
Sbjct: 15  RQHNPRASPI----NLISALKLGDSSDCIKLKISSV 46


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 5   PVTEQQSPHTAALPPRTTRIHNPPTTPIRP 94
           P T          PP     +NPPTTP++P
Sbjct: 167 PTTTPPVKPPTTTPPVQPPTYNPPTTPVKP 196


>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
           RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
           PIR2:A28490
          Length = 725

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 58  TYSQPAYNSYPPQQ-QYSNSY 117
           TY QP Y+S PP Q  Y  SY
Sbjct: 494 TYEQPKYDSNPPMQPPYGGSY 514


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 23  SPHTAALPPRTTRIHNPPTTPIRPNNSTL 109
           +P  ++L P ++R   PP++P RP    +
Sbjct: 219 TPSLSSLSPSSSRARRPPSSPARPGKKLM 247


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 5   PVTEQQSPHTAALPPRTTRIHNPPTTPIRP 94
           PV  Q  P T   PP+T  +   PT P  P
Sbjct: 178 PVFSQPQPQTQTQPPQTHNVSFTPTPPPLP 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,033,571
Number of Sequences: 28952
Number of extensions: 172407
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)