Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0462.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.53 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.8  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   2.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 409 HNGPQNGFESNGPISSI 459
           +N P NG  S+GP SSI
Sbjct: 75  NNVPSNGLSSSGPFSSI 91


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 224 QFVYKIFVINRAGDEMWPRVLRHLLKDN 307
           QF+  +F   R   + W   +RH L  N
Sbjct: 168 QFIMDLFPFYRQNQQRWQNSIRHSLSFN 195


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 499 EFVRDWAKYHFQVQGNYPGYPG 564
           EFV+ W    F +   YPG  G
Sbjct: 127 EFVKTWGFDGFDLDWEYPGQRG 148


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 297 LKTTLER--QSDCPKCRSKIKSS 359
           LK+T+     +DC KC  K+K++
Sbjct: 58  LKSTIPEALSTDCAKCNEKVKAN 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,776
Number of Sequences: 336
Number of extensions: 4003
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)