Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0462.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 46 6e-06
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 42 1e-04
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 39 7e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 0.001
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 38 0.001
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 0.003
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 36 0.007
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 36 0.007
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 35 0.012
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 34 0.021
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 33 0.047
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.11
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 31 0.14
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.14
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.19
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.58
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 29 1.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 28 1.8
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 3.1
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 4.1
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 5.4
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.4
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 7.2
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 46.0 bits (104), Expect = 6e-06
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLERQSDCPKCRSKIKSSRGYH 371
T CGH++C+ CL+ L+ S CP C++K+ + Y+
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYY 1140
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 41.5 bits (93), Expect = 1e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 261 ATKCGHVFCATCLKTTLERQSDCPKCRS 344
AT+CGH+FC +C+ ++S+CP CR+
Sbjct: 268 ATECGHIFCWSCINGWTSKKSECPLCRA 295
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 255 VLATKCGHVFCATCLKTTLERQSDCP--KCRSKI 350
+ A KCGH+FC+TC K ++ CP CR +I
Sbjct: 162 IFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRI 195
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 38.7 bits (86), Expect = 0.001
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLERQSDCPKCRSKI 350
T CGH +C CL L+ CP CR K+
Sbjct: 98 THCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCPKCRSKIKSSR 362
L T C H FC+ C++ L CP CR+ + SR
Sbjct: 40 LITSCSHTFCSFCIRDYLREHPMCPACRAPEQESR 74
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCPKCRSKIKS 356
+ + CGH FC CL L + CP CR + S
Sbjct: 180 VVSPCGHTFCGPCLMQALTQSPQCPTCRFGLPS 212
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 261 ATK--CGHVFCATCLKTTLERQSDCPKCRSKI 350
ATK CGH+F CL+ LE CP CR ++
Sbjct: 122 ATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 35.9 bits (79), Expect = 0.007
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKI 350
CGH+ CL+ LERQ CP CR +
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSV 354
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 261 ATKCGHVFCATC---LKTTLERQSDC 329
ATKCGHV+C +C LKT+ QS C
Sbjct: 209 ATKCGHVYCGSCAKVLKTSKRSQSKC 234
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 34.3 bits (75), Expect = 0.021
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLE-RQSDCPKCRSKIKSS 359
L CGH FC+ C++ E + S CP+C + S
Sbjct: 651 LIPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVS 685
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 264 TKCGHVFCATCLKT---TLERQSDCPKCRSKIKSSR 362
T CGH+FC C+ + T CP CR K+ ++
Sbjct: 219 TPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNK 254
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD-CPKCRSK 347
C HVFC CL +++ D CP CR+K
Sbjct: 375 CSHVFCLHCLIILQKQKVDFCPLCRAK 401
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCPKCRSKIK 353
+AT CGH FC C T + C +C + K
Sbjct: 265 IATTCGHHFCEQCAITRYRKTPTCIQCGADTK 296
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLE--RQSDCPKCRSKIK 353
T CGH +C C+ + L+ CP C+ +I+
Sbjct: 211 TDCGHTYCYACIMSRLKLVNNVSCPICKHRIR 242
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 270 CGHVFCATCLKTTLE-RQSDCPKC 338
CGH FC C++ +E RQ CP C
Sbjct: 643 CGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCPKCR 341
+ T C H++ CL +E +S CP CR
Sbjct: 643 MLTPCHHLYHRQCLLQWMETRSICPVCR 670
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 270 CGHVFCATCLKTT-LERQSDCPKCRSK 347
C +FC C++T L+ +CP C K
Sbjct: 298 CDKLFCEECIQTALLDSDFECPNCHRK 324
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSK 347
CGH F CL++ + CP CR++
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTE 81
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 309 LERQSDCPKCRSKIKS 356
LE + DCPKC SKI S
Sbjct: 283 LEGRFDCPKCNSKIGS 298
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 264 TKCGHVFCATCLK 302
T+CGHV C +CL+
Sbjct: 190 TRCGHVSCQSCLR 202
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 229 CLQDLCNKSCWRRNVATCSAPPA*RQRWKGNRTVRNVDLK*NH-LVAITLYTWILLVSKI 405
CLQ+ +K W+ + P + +R +V+L L+ ++ ++S +
Sbjct: 40 CLQEYLDKEAWKDDTLIIDLRPV--SEFSKSRIKGSVNLSLPATLIKRPAFSVARIISNL 97
Query: 406 HHNGPQNGFESNGPISSIVVC 468
H + F++ SSI+VC
Sbjct: 98 HDVDDKRDFQNWQEFSSILVC 118
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLE 314
++CGHV+C +CL +E
Sbjct: 228 SRCGHVYCFSCLLRFVE 244
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 255 VLATKCGHVFCATCLKTTLERQSDCPKCRSKI 350
V+ C H F C+K L C CR+ +
Sbjct: 409 VIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,207
Number of Sequences: 5004
Number of extensions: 66487
Number of successful extensions: 170
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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