Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0462.Seq
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56584| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 46 3e-05
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 46 3e-05
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 43 3e-04
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 40 0.002
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 38 0.009
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 37 0.016
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 37 0.022
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 36 0.050
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 35 0.066
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 35 0.066
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 34 0.12
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10) 33 0.27
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 33 0.35
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 32 0.47
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 32 0.47
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 32 0.47
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.47
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.47
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 32 0.47
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013) 32 0.47
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 32 0.62
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 31 0.82
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 31 0.82
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 1.1
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 31 1.1
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 1.1
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 31 1.1
SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061) 31 1.1
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 31 1.1
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 31 1.4
SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09) 31 1.4
SB_54922| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0028) 31 1.4
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 30 1.9
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 30 1.9
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 29 4.4
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 4.4
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 29 5.8
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 29 5.8
SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07) 28 7.6
>SB_56584| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 158
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLE-RQSDCPKCRSKIKSSRGYHAIYL 383
+ TKC HVFC CLKT + RQ CPKC + S +H +YL
Sbjct: 117 ILTKCFHVFCYECLKTRYDTRQRKCPKCNATF-GSNDFHKMYL 158
>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 406
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLE-RQSDCPKCRSKIKSSRGYHAIYL 383
+ TKC HVFC CLKT + RQ CPKC + S +H +YL
Sbjct: 365 ILTKCFHVFCYECLKTRYDTRQRKCPKCNATF-GSNDFHKMYL 406
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 43.2 bits (97), Expect = 3e-04
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCPKCRSKI 350
+ T CGHVFC CL +L+ + CP CRS +
Sbjct: 390 VTTPCGHVFCRACLNRSLDHRPGCPICRSSL 420
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQ--SDCPKCRSKIKS 356
+ T CGH FC +CL+T L R CP CRS + S
Sbjct: 29 ITTICGHSFCESCLETWLSRPEVQSCPSCRSHVLS 63
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 37.9 bits (84), Expect = 0.009
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 255 VLATKCGHVFCATCLKTTLERQSDCPKCRSKI 350
++ C H+FC C+ +R+ CP CR+++
Sbjct: 494 IMLRTCKHIFCEDCISLWFDREQTCPMCRARV 525
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKIKSSRGYHAIYLDTS 392
C H FC CL++ L +++ CP CR ++ S+ +I LD +
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPICRCAVQ-SQPVRSIVLDNA 425
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 36.7 bits (81), Expect = 0.022
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKI 350
CGH FC CL +L+ + +CP CR+ +
Sbjct: 345 CGHSFCRDCLYRSLDHRVECPCCRAPL 371
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKI 350
CGH +C C+K + +C KC KI
Sbjct: 37 CGHTYCLACIKDEFTGK-NCKKCGFKI 62
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 35.5 bits (78), Expect = 0.050
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD-CPKCRSKIK 353
CGH+ C CL+ E+ D CP CRS IK
Sbjct: 200 CGHLMCHLCLEQWQEKGGDGCPFCRSPIK 228
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 35.1 bits (77), Expect = 0.066
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLERQS---DCPKCRSKIKSS 359
T+C HVFC CL +E + CP CR+ + +
Sbjct: 78 TRCAHVFCTGCLTDVIENEGLAPRCPMCRAPVNQN 112
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 35.1 bits (77), Expect = 0.066
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCR 341
CGH +C CL LE + CP CR
Sbjct: 280 CGHKYCEPCLSRWLENNTTCPICR 303
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD-CPKCRSKIK 353
CGH+ C CL+ E+ D CP CRS +K
Sbjct: 396 CGHLMCHLCLEQWQEKGGDGCPFCRSPMK 424
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLER---QSDCPKCRSKIKSS 359
+AT C H FC C+ L++ +S CP C++ I S+
Sbjct: 171 IATPCDHYFCVLCICEWLDQTYNKSGCPVCKASISSN 207
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCP 332
L T CGHVFC+ CL + CP
Sbjct: 68 LVTTCGHVFCSQCLVHWIAENGTCP 92
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 550 PGYPGMQGVEGELNELMEKGGQN*RSTRGI 639
PG PG QG+EG E E G Q + RG+
Sbjct: 383 PGLPGAQGIEGPKGERGEPGNQGLKGDRGV 412
>SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)
Length = 169
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLERQSD--CPKCRSKIKSSRGY 368
T+C H FC +C+ T L+ D CP C + I + +
Sbjct: 78 TECLHTFCKSCIVTYLQDSEDNTCPSCNTVIHETNPF 114
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKI 350
CGH+FC C+K R C CR I
Sbjct: 86 CGHMFCFLCIKGVALRSRKCAICRQPI 112
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD----CPKCRSKIKSS 359
C H +C CL++ +E + CP+CR KI+ S
Sbjct: 32 CLHTYCRHCLESLVEHSKECTVSCPQCREKIEIS 65
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD----CPKCRSKIKSS 359
C H +C CL++ +E + CP+CR KI+ S
Sbjct: 31 CLHTYCRHCLESLVEHSKECTVSCPQCREKIEIS 64
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 547 YPGYPGMQGVEGELNELMEKGGQN*RSTRGIR 642
Y GY G +G++G+ + +KG + R T+G+R
Sbjct: 458 YRGYTGARGLQGKTGKTGQKGAKGARGTQGVR 489
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLER---QSDCPKCRSKI 350
+AT C H FC C+ L++ +S CP C++ I
Sbjct: 171 IATPCDHYFCVLCICEWLDQTYNKSGCPVCKASI 204
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD----CPKCRSKIKSS 359
C H +C CL++ +E + CP+CR KI+ S
Sbjct: 41 CLHTYCRHCLESLVEHSKECTVSCPQCREKIEIS 74
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLER---QSDCPKCRSKI 350
+AT C H FC C+ L++ +S CP C++ I
Sbjct: 45 IATPCDHYFCVLCICEWLDQTYNKSGCPVCKASI 78
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKIKSSRG 365
CGH FC C+ + CP CR +G
Sbjct: 694 CGHTFCRPCITEASKSSKLCPTCRDPFGVQQG 725
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 270 CGHVFCATCLKTTLE---RQSDCPKCRSKIKSSR 362
CGH+FC CL LE +S CP C++ I +
Sbjct: 78 CGHLFCWPCLHRWLETRPNRSMCPVCKAGISKEK 111
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKIKSSRG 365
CGH FC C+ + CP CR +G
Sbjct: 769 CGHTFCRPCITEASKSSKLCPTCRDPFGVQQG 800
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLER---QSDCPKCRSKI 350
+AT C H FC C+ L++ +S CP C++ I
Sbjct: 171 IATPCDHYFCVLCICEWLDQTYNKSGCPVCKASI 204
>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
Length = 499
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCPKCRSKIKSS 359
+ T+C +FC+ C+ L C CRS ++ S
Sbjct: 343 VVTQCDQIFCSGCITAWLRNAGACSSCRSVLEVS 376
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 31.9 bits (69), Expect = 0.62
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 267 KCGHVFCATCLKTTLERQSDCPKCRSKIKSSRGY 368
+C H FC +C+ + L+ CP C +++ +R +
Sbjct: 1381 ECLHSFCRSCIVSWLQASYHCPVCDTEVHKTRPF 1414
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 31.9 bits (69), Expect = 0.62
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 258 LATKCGHVFCATCLKTTLERQSDCPKC 338
L T CGHV C C ++ CP C
Sbjct: 29 LVTGCGHVLCTKCYNKRSKKHLGCPLC 55
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 31.9 bits (69), Expect = 0.62
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 276 HVFCATCLKTTLERQSDCPKCRSKIKSSR 362
HVFC+ CL L CP CR+ I +
Sbjct: 120 HVFCSPCLDLWLRTNRYCPTCRTPINQDQ 148
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +3
Query: 270 CGHVFCATCLKTTLER-QSD---CPKCRSKIKSS 359
C H +C CL++ E Q D CP+CR KI+ S
Sbjct: 31 CLHTYCRHCLESLAEHSQGDSISCPQCREKIQIS 64
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 31.5 bits (68), Expect = 0.82
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 270 CGHVFCATCLKTTL---ERQSDCPKCRSKIKSSR 362
CG +FC CL L +R DCP C + +SR
Sbjct: 800 CGRMFCRQCLGVMLKDADRTIDCPICTRRSNTSR 833
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD----CPKCRSKI 350
C H +C CL++ +E + CP+CR KI
Sbjct: 32 CLHTYCRHCLESLVEHSQERTVSCPQCREKI 62
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 267 KCGHVFCATCLKTTLERQSDCPKCRSKIKSSR 362
+C H FC C+ LE CP C ++I +R
Sbjct: 63 ECLHSFCRCCIVRYLETSYRCPVCDAEIHKTR 94
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD----CPKCRSKI 350
C H +C CL++ +E + CP+CR KI
Sbjct: 32 CLHTYCRHCLESLVEHSQERTVSCPQCREKI 62
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLERQ--------SDCPKCRSKI 350
T CGH FC CL+T + + + CP CR+ +
Sbjct: 31 TPCGHSFCGVCLETWMNAKLEENEKCPASCPSCRADL 67
>SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061)
Length = 63
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 255 VLATKCGHVFCATCLKTTLERQSDCPKCRSKIKSSRGYHAIYL 383
+++ C HV C C TL + CP+C + I S IYL
Sbjct: 22 LVSISCWHVHCEECWLRTLGAKKLCPQC-NMITSPNDLRKIYL 63
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 267 KCGHVFCATCLKTTLERQSDCPKCRSKIKSSR 362
+C H FC C+ LE CP C ++I +R
Sbjct: 31 ECLHSFCRCCIVRYLETSYRCPVCDAEIHKTR 62
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 255 VLATKCGHVFCATCLKT-TLERQSDCPKC 338
VL CG +C C++T LE + +CP C
Sbjct: 70 VLIPCCGTSYCDECIRTYLLENEQECPTC 98
>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
Length = 207
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +3
Query: 264 TKCGHVFCATCLKTTLERQS---DCPKCRSK 347
T C H FC CL L ++S CP CR K
Sbjct: 82 TACLHSFCKECLHKMLSKRSKYIHCPLCRKK 112
>SB_54922| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0028)
Length = 116
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 255 VLATKCGHVFCATCLKT-TLERQSDCPKC 338
VL CG +C C++T LE + +CP C
Sbjct: 70 VLIPCCGTSYCDECIRTYLLENEQECPTC 98
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD----CPKCRSKIKSSRG 365
C H C CL+ R+S CP CRS+I RG
Sbjct: 36 CMHDLCRKCLEDMAARESSRVIRCPLCRSEIDIPRG 71
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 791 PLGPFPMGKPPIKMGILKIPLGRPAKRCPLGS 696
P P PMG P +MG+ PL RPA GS
Sbjct: 574 PARPDPMGYSPSEMGVPSSPLPRPASDPRYGS 605
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 255 VLATKCGHVFCATCLKTTLERQSDCPKCRSK 347
V+ CGH C+TC K + CP+CR +
Sbjct: 41 VVMPNCGHSCCSTCAKRVNRK---CPECREE 68
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCP 332
C H FCA+C +E DCP
Sbjct: 81 CMHSFCASCYSQWMEHSRDCP 101
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKI 350
C H+F C+ LE+ + CP CR ++
Sbjct: 80 CDHLFHPGCILPWLEKTNSCPVCRHEL 106
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKIKSS-----RGYHAIYLDTSSF*NTPQWPSKW 428
CGH C C L + CP C ++ + + +H + +W KW
Sbjct: 447 CGHRVCTKCYTKLLSSSARCPGCMDELNENIPDIDKAFHEEIQELDVKCRNVEWNCKW 504
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSDCPKCRSKIKSS 359
CGH FC C + + CP C+ ++K++
Sbjct: 255 CGHTFCQMCTRDCRK----CPDCQMRVKAT 280
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD---CPKCR 341
C H FC C+ E Q D CP C+
Sbjct: 351 CSHTFCTECIMKIKELQGDVVECPTCK 377
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 252 IVLATKCGHVFCATC---LKTTLERQSDCPKCR 341
I L +CGH +C +C L + Q CP+C+
Sbjct: 404 IPLLLECGHTYCDSCIIKLSRLQKTQVACPECQ 436
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +3
Query: 270 CGHVFCATCLKTTLERQSD---CPKCRSK 347
CGH C CL+ +R CP CRS+
Sbjct: 39 CGHSVCLQCLQNMTKRNPPSLLCPVCRSE 67
>SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)
Length = 137
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +3
Query: 267 KCGHVFCATCLKTTLER-QSDCPKC 338
+CGH C C KT + CPKC
Sbjct: 70 ECGHRLCQHCYKTIWRSPEPKCPKC 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,369,116
Number of Sequences: 59808
Number of extensions: 493771
Number of successful extensions: 1139
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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