Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0461.Seq
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu...    28   6.2  
At4g27860.1 68417.m04000 integral membrane family protein contai...    28   8.2  

>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
            putative similar to mdr-like P-glycoprotein atpgp1
            GI:3849833 from [Arabidopsis thaliana]
          Length = 1245

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 313  SKQKIIIRA*DKVMKGRTLT*VTNKDNREDEVDEVRAGARGR 438
            S +K++  A DK+MKGRT   V ++ +   + D V    +GR
Sbjct: 1176 SSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGR 1217


>At4g27860.1 68417.m04000 integral membrane family protein contains
           Pfam PF01988: Integral membrane protein
          Length = 611

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 672 HLKSQSFPMTRFPLVNLLSLVPFPFHSLLFRLSTTSR 562
           HL+  S P  R P  ++L L+P     LLF +S  SR
Sbjct: 239 HLQLPSMPTLRMPSASVLLLLPTSAVLLLFIISMRSR 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,081
Number of Sequences: 28952
Number of extensions: 238108
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)