Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0459.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.005
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.77 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    27   2.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   3.1  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   4.1  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   4.1  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   5.4  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.5  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   9.5  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 299 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 436
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 121 TIPTMETW-TPFPTARAIVTEEAWS*AVTTILTTTPEMWAVVWPRSVPPARSRTGAFNGP 297
           T P +ET  TP   A    TE      V+TI TTTP M A++ P +V      T A   P
Sbjct: 215 TTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTP-MEAMITP-TVETTTLPTAAMTTP 272

Query: 298 GVHT*SSP 321
              T ++P
Sbjct: 273 VEETTTTP 280


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +3

Query: 150 LSYGSGDSNRGGLVMSRYYNPYYNPRDVGGGMAAFCTASPKPHRRLQRAR 299
           +++GSG++N G L  +++    Y P ++  G      + P  +  L++ +
Sbjct: 519 VTFGSGNTNIGSLRQTKFKQSNYTPPELNDGSRQHRPSRPSKNPSLKKKK 568


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 AVTTILTTTPEMWAVVWPRSV 258
           A T IL TTPE W VV  +SV
Sbjct: 386 AETQILVTTPEKWDVVTRKSV 406


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPEMWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 312



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPEMWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 390



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPEMWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 546



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPEMWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 624



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPEMWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    +P
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEIP 468


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 109 KRIPTIPTMETWTPFPTARAIVTE 180
           K IPT PT E+  PFP+  A  T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 309 GMYTWPVEGACAASGWRYRTRPY-HRPH 229
           G++ W   G C  S ++Y +  Y H PH
Sbjct: 226 GIFDWDPHGLCIYSCFKYGSNAYSHEPH 253


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 264 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 404
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 505 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 416
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 338 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 466
           TS+ PQ ++ +Y     +  + S T+  +  + T K++  S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 356 QENEVYYPQQPENPIFSPTQATELADPTE 442
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,282
Number of Sequences: 5004
Number of extensions: 56641
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)