Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0458.Seq
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    30   0.089
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    30   0.089
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   0.63 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   3.4  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   4.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   7.8  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    24   7.8  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 30.3 bits (65), Expect = 0.089
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 257 LSYSYYAFVRDS*FVFLIIRLI*KLNMCTSLPRTVRLSAECVLSAHLWEIGHXAVHTCVV 78
           LSYS+ +    S  + +++     L      P T+    E +++  LWEI H    T V 
Sbjct: 675 LSYSWRSLKETSSLLTVLLTKCLSLFDEEFTPFTLNYYGELMMT-WLWEIRHRGAFTSVY 733

Query: 77  ACTLWLCDFL--*NKH 36
            C +  C FL   NKH
Sbjct: 734 PCFIEYCSFLFECNKH 749


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 30.3 bits (65), Expect = 0.089
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 212 IQITNLLQKHNTSKIVDAPEPLRAAESGHEPRGLRRRAPYAV 337
           I ++  ++KH+ S+++ AP      E+G +     RR PY+V
Sbjct: 648 IDMSEYMEKHSVSRLIGAPPGYVGHEAGGQLTEQLRRRPYSV 689


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 67   RVQATTHVCTALCPISHKCAERTHSAER 150
            ++ AT ++C A+C I   C++R    ++
Sbjct: 969  QIYATENICVAICKICRFCSQRVQDLDK 996


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 197 LI*KLNMCTSLPRTVRLSAECVLSA-HLWEIGHXAVHTCVVAC 72
           L+ K+    + PR  R++ +C+L+A HL  + H   +   ++C
Sbjct: 543 LLHKMKNAKNSPRVDRINEDCILAARHLISLVHLLQNHSQLSC 585


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 228 RFVICIPDYSIDMKIKHVYVAPPDCAPFGRMRSF 127
           +F++   +Y+I++ +    + PP+ A F   R F
Sbjct: 233 QFLVYFSEYTINIGVAPTLLFPPEKAGFSSFRDF 266


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 49  RKSHNHRVQATTHVCTALCPISHKCAER 132
           +K    R     HVC + C   H C ER
Sbjct: 728 KKECGKRRMYCEHVCQSPCHAGHPCDER 755


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 233 QKHNTSKIVDAPEPLRAAESGHEPRGLRRRAPYAV 337
           +KH  ++++ +P      E   E     RR PYAV
Sbjct: 573 EKHTIARLIGSPPGYIGYEESGELTEAVRRKPYAV 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,163
Number of Sequences: 5004
Number of extensions: 26852
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)