Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0458.Seq
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385...    34   0.027
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394...    29   0.76 
11_03_0031 - 9094643-9095824,9095945-9096034,9096141-9096216,909...    29   1.0  
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           28   2.3  
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456...    27   4.0  
11_06_0464 + 23894893-23895077,23895148-23895706                       26   7.1  
01_07_0224 - 42121011-42122486                                         26   7.1  
01_06_0651 - 30878853-30879150,30879250-30879479                       26   9.3  

>02_01_0531 -
           3856343-3856373,3856426-3856506,3857972-3858097,
           3858196-3858326,3858832-3858855,3859429-3859482,
           3859967-3860136,3860322-3860380,3861274-3861390,
           3861481-3861611,3861720-3861770,3862305-3862481
          Length = 383

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 162 GERRTHV*FSYQSNNQEYKSRISYKSIIRVR*SMHPSRSG 281
           GERR +V FS+ S  + Y SR+  K++  +  S H S  G
Sbjct: 211 GERRGNVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKG 250


>03_04_0140 +
           17638335-17638583,17638843-17639061,17639206-17639443,
           17640614-17640809,17640888-17640942,17641495-17641645,
           17642501-17642809,17642950-17643215,17643311-17644237,
           17644386-17644712
          Length = 978

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 212 IQITNLLQKHNTSKIVDAPEPLRAAESGHEPRGLRRRAPYAV 337
           I ++  ++KH+ S+++ AP      E G +     RR PY++
Sbjct: 719 IDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSI 760


>11_03_0031 -
           9094643-9095824,9095945-9096034,9096141-9096216,
           9096759-9096976,9097283-9097512,9097617-9097683,
           9097863-9098048,9098164-9098295,9098380-9098492,
           9098771-9098777
          Length = 766

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 212 IQITNLLQKHNTSKIVDAPEP-LRAAESGHEPRGLRRRAPYAV 337
           + ++  ++KH  +K+V +P   +  AE G     +RRR PYAV
Sbjct: 514 LDMSEFMEKHTVAKLVGSPPGYVGYAEGGQLTEAIRRR-PYAV 555


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 173 TSLPRTVRLSAECVLSAHLWEIGHXAVHTCVVACTL-WLCD 54
           T+  R  RL A   LSAH+W++   A H     C L WL D
Sbjct: 250 TASRRATRLEA---LSAHVWKLLAAATHGSDARCRLAWLVD 287


>02_01_0611 -
           4567839-4568144,4568280-4569209,4569301-4569566,
           4569662-4569970,4570497-4570647,4570958-4571012,
           4571137-4571512,4571560-4571797,4571878-4572096,
           4572629-4572910
          Length = 1043

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 212 IQITNLLQKHNTSKIVDAPEP-LRAAESGHEPRGLRRRAPYAV 337
           I ++  ++KH  S++V AP   +   E G     +RRR PY+V
Sbjct: 790 IDMSEYMEKHAVSRLVGAPPGYIGYGEGGQLTEAVRRR-PYSV 831


>11_06_0464 + 23894893-23895077,23895148-23895706
          Length = 247

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 28  VQKCLFYRKSHNHRVQATTHVCTALCPISHKCAERTHSAERRTVRGSDVHMF 183
           +  C F+   H  R++       A  P S + +    S  RRT R S VH F
Sbjct: 47  IDSCRFHVGDHAWRIRTPPPPPAATAPPSRRSSCSACSTRRRTYR-SSVHSF 97


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 261 STILLVLCFCKRFVICIPDYSID 193
           S +L VL +  RF++  P Y +D
Sbjct: 32  SVVLCVLLYAPRFIVLTPTYGLD 54


>01_06_0651 - 30878853-30879150,30879250-30879479
          Length = 175

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 206 SGIQITNLLQKHNTSKIVDAPEPLRAAESGH 298
           SG    NL+ ++NT  ++  P P+   +SG+
Sbjct: 143 SGSSCANLMARNNTKSMLYRPPPIPVNKSGY 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,594,591
Number of Sequences: 37544
Number of extensions: 184645
Number of successful extensions: 418
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)