Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0458.Seq
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    33   0.056
U64834-3|AAB04824.1|  437|Caenorhabditis elegans Hypothetical pr...    30   0.52 
Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    26   8.5  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 49  RKSHNHRVQATTHVCTALCPISHKCAERT--HSAERRTVRGSDVHMFNFHINRIIRNTNH 222
           R+ H  R +AT+++CTA   +++  A     H  +R T     VH    ++   +RN  H
Sbjct: 340 REQHIRRDKATSNICTAQALLANMSAMYAVYHGPQRLTEIARGVHKSTAYLAYHLRNAGH 399

Query: 223 ESLTK 237
           E + K
Sbjct: 400 EIVHK 404


>U64834-3|AAB04824.1|  437|Caenorhabditis elegans Hypothetical
           protein F54D11.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 73  QATTHVCTALCPISHKCAERTHSAERRTVRGSDVHMFNFHINRIIRNTN 219
           Q  T+V TA  P++      T   +  T+R +DV +FN  +++II N +
Sbjct: 35  QGQTYV-TAFTPLTSNVQVHTSLEQLSTIRNADVLIFNNALSQIITNAD 82


>Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical
           protein F59F5.3 protein.
          Length = 681

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 82  THVCTAL-CPISHKCAERTHSAERRT 156
           THV   L CP   KC E T+ A RR+
Sbjct: 252 THVSVILACPSKSKCPELTNRANRRS 277


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 61  NHRVQATTHVCT-ALCPISHKCAERT 135
           NH V  T   C+ A CP+  KC E T
Sbjct: 647 NHTVNITDIGCSNATCPVGKKCEEVT 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,157,871
Number of Sequences: 27780
Number of extensions: 163176
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)