Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0458.Seq
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   4.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   9.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    20   9.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   9.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 192 YQSNNQEYKSRISYKSII 245
           Y  NN  Y  ++ YK+ I
Sbjct: 104 YNYNNNNYNKKLYYKNYI 121


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 166 SDVHMFNFHINRIIRNTNHES 228
           SD+H  N  INR + +T   S
Sbjct: 398 SDLHHPNCKINRKVHHTTSSS 418


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = +1

Query: 79  TTHVCTALCPISHKCAERT 135
           T H+      I  KC  RT
Sbjct: 365 TAHIACKFAEIKEKCDRRT 383


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = +1

Query: 79  TTHVCTALCPISHKCAERT 135
           T H+      I  KC  RT
Sbjct: 76  TAHIACKFAEIKEKCDRRT 94


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 172 RRSPGLCAFRPNAFFRHIYGRSDIXQYIRVS*PVLCG 62
           R + G C  R     RHI   S I +  R+  P   G
Sbjct: 445 REAAGNCRKRGEKIARHINSVSYIDKVARIVFPASFG 481


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 97  ALCPISHKCAERTHSAERRTVR 162
           A  PI+ +C E  +  + R  R
Sbjct: 365 ATLPITFRCLEENNKIDSRVTR 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,944
Number of Sequences: 438
Number of extensions: 2026
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)