Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0457.Seq
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   3.4  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    26   4.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   7.8  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 409 PTFGGALSPGRNSTAMPRPEL-PPSMASR 492
           PT G  ++PG   + MP P + PPSM ++
Sbjct: 773 PTSGVMMAPGAAKSGMPYPFIQPPSMTNQ 801


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 165 HQNWTVNKSCLLHRSGNIYLGRVYAIMNHSILYKIVEQGLIIGYGKLEFSTSASKP 332
           HQ+ +++    +H++ NI L +++++ N+   +    Q   I Y  LEF     +P
Sbjct: 35  HQSESLSPWPTIHKNFNILLSQIHSLSNNLAAHSHTLQTTSI-YPSLEFPVKEQEP 89


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 564 IPNSMSEYE*TCHGFKRWATTNHSGF 641
           I  S  ++E TC GFK+  TT++  F
Sbjct: 66  IAGSAKDHE-TCRGFKKTGTTSYKDF 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,067
Number of Sequences: 5004
Number of extensions: 56473
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)