Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0457.Seq
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0389 - 2816878-2817390,2817552-2817670,2817803-2817865,281...    28   6.2  
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004...    28   8.1  
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558...    28   8.1  
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285...    28   8.1  
02_05_0817 + 31994241-31995908                                         28   8.1  
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029...    28   8.1  

>02_01_0389 -
           2816878-2817390,2817552-2817670,2817803-2817865,
           2818229-2818355,2818607-2818827,2818973-2819136,
           2819766-2819846,2820657-2820728,2820857-2820995,
           2821206-2821690,2821995-2822550,2822610-2822666,
           2822705-2822774
          Length = 888

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 537 NANNFNLKPIPNSMSEYE*TCHGFKRWATTNHSGFW*KVGDTIPTTNH 680
           N+N FN+ P  NS++ Y    H  + W+T +    W ++  T    N+
Sbjct: 213 NSNRFNMGPTDNSITRYPLDPHD-RLWSTYDTIPDWTEISATSVVQNY 259


>07_03_1192 +
           24698355-24698433,24699312-24699391,24700027-24700483,
           24700641-24700794,24700878-24701155,24701225-24701517
          Length = 446

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -3

Query: 539 IVNLRVCKSSCPNNVALEAIDGGSSGLGIAVELRPGDKAPPKVGVT 402
           IVN   C   C NN     ++G S  L   V     D   P V  T
Sbjct: 237 IVNCPTCSCGCQNNKPGSCVEGNSPYLASVVNTHNKDSLTPLVQCT 282


>06_03_0383 -
           20154045-20154712,20154969-20155122,20155780-20155896,
           20157395-20157466
          Length = 336

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 617 PAFEPVTGLLILRHGIRNWLEVKV 546
           P  +PVTG+ I+ H   NW  + +
Sbjct: 108 PQLKPVTGIRIINHSSNNWNNMNI 131


>05_05_0237 -
           23526613-23527178,23527979-23528066,23528384-23528527,
           23528674-23528790,23528860-23528970,23530911-23531062,
           23531362-23531450,23531664-23531761
          Length = 454

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 421 GALSPGRNSTAMPRPELPPSMASRATLFGHELLQ 522
           G  SPGR  +   RP +PP  AS       ELLQ
Sbjct: 9   GCFSPGRAMSPQVRPPVPPDAASGGQYLA-ELLQ 41


>02_05_0817 + 31994241-31995908
          Length = 555

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = +1

Query: 430 SPGRNSTAMPRPELPPSMASRATLFGHELLQTRRFTMPTTLTSSQF-LIPCR---SMSKP 597
           SP  N T++P P   P      TL    L  T    +PT L   +F  +  R   ++ + 
Sbjct: 35  SPRLNPTSVPPP---PRQLHLPTLQARRLCSTTHVVLPTNLQDERFAALSDRIYDAVIET 91

Query: 598 VTGSNAGQQLTIPVFGERWGTP 663
             GS+ G +  +   G    TP
Sbjct: 92  AAGSSEGTEAALDALGAELTTP 113


>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
            13504409-13504497,13504612-13504696,13504852-13505011,
            13505096-13505160,13505296-13505349,13505437-13505527,
            13505685-13505986,13506084-13506365,13506451-13506764,
            13506920-13507080,13507202-13507305,13507379-13507535,
            13507652-13507896,13507995-13508327,13508428-13508751,
            13508816-13508899,13509001-13509169,13509610-13509731,
            13510538-13510792,13511115-13511252
          Length = 1377

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 73   SSLQCFIAAFYAKTVLCTIYIGV*NFECTKNIKIGQSTNLVYYIE 207
            S L  F++ F+A  V C +YIG+ N  C + + + + T  V+Y E
Sbjct: 1191 SELYQFVS-FHAVLVNCILYIGIQNSGCVQPVVVVERT--VFYRE 1232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,425,038
Number of Sequences: 37544
Number of extensions: 368898
Number of successful extensions: 1037
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)