Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0457.Seq
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)                    29   2.7  
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)                     29   4.8  
SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)                      29   4.8  
SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)                  28   6.3  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
          Length = 443

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 526 RRFTMPTTLTSSQFLIPCRSMSKPVTGSNAGQQLTIPVFGERW 654
           R+  +  T T SQF+IP  S+ K V  +  GQ+++     ER+
Sbjct: 116 RKIRIQKTKTPSQFIIPKSSLHKDVDETKPGQRMSKAAVLERF 158


>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
          Length = 751

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 455 CPGRSSPHQWPLELRCLGTSFCRPE 529
           CPGRSSP  +P+ LR L T     E
Sbjct: 318 CPGRSSPTFFPIALRPLPTPLATEE 342


>SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)
          Length = 754

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 455 CPGRSSPHQWPLELRCLGTSFCRPE 529
           CPGRSSP  +P+ LR L T     E
Sbjct: 344 CPGRSSPTFFPIALRPLPTPLATEE 368


>SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)
          Length = 272

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 101 FTRRQFYVPFILVFKILNAQKTSKLDSQQILFITSKRKYLSWQSI 235
           F   +F+  F+L  ++L A    ++  ++ + +   RKY SW +I
Sbjct: 227 FGNVKFFNRFLLKDRVLEAFPKVRISDRRTVIVIKGRKYRSWNAI 271


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 403  VTPTFGGALSPGRNSTAMPRPE-LPPS 480
            V P + GA++PG  S  +P P  LPPS
Sbjct: 992  VQPGYPGAMTPGAPSPGVPSPTGLPPS 1018


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,363,510
Number of Sequences: 59808
Number of extensions: 424188
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)