Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0457.Seq
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical p...    31   0.60 
Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical p...    31   0.60 
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    30   1.8  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    29   4.2  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical
           protein K07F5.13c protein.
          Length = 639

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 496 TLFGHELLQTRRFTMPTT---LTSSQFLIPCRSMSKPVTGSNAGQQLTIPVFG 645
           +LFG    Q + FT PT     TSS  L    + SKP+ GS A    T  +FG
Sbjct: 2   SLFGSSTPQKQAFTFPTPNAPTTSSGTLFGSTTPSKPLFGSTAQASSTPSLFG 54


>Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical
           protein K07F5.13b protein.
          Length = 549

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 496 TLFGHELLQTRRFTMPTT---LTSSQFLIPCRSMSKPVTGSNAGQQLTIPVFG 645
           +LFG    Q + FT PT     TSS  L    + SKP+ GS A    T  +FG
Sbjct: 2   SLFGSSTPQKQAFTFPTPNAPTTSSGTLFGSTTPSKPLFGSTAQASSTPSLFG 54


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 136 QYKWYIKLSSRKTLL*NTVNLIHLYVTDKCFKIF 35
           QYK  +KLS     + N +N+IH +V DK  K F
Sbjct: 98  QYKLIVKLSHVAADIDNEINVIHKFVRDKYEKRF 131


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = +1

Query: 406 TPTFGGALSPGRNSTAMPRPELPPSMASRATLFGHELLQTRRFTMPTTLTSSQFLIPCRS 585
           TP FG +  P  +S  + +P  P    +  +LFG+          P    ++ FL P  +
Sbjct: 754 TPAFGLSAKPAVSSAPVEKPSAPEVPKTAGSLFGN-------IAKPADSATTSFLAPGAA 806

Query: 586 MSKPVTGSNAGQQL 627
            S       AG  L
Sbjct: 807 SSTSSLAPTAGSSL 820


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 457 PRPELPPSMASRATLFGHELLQTRRFTMPTTLTSSQFLIPCRSMSKPV 600
           P P+ PP ++ +  L G ++  T++F +P T   +Q+ +   SM+ P+
Sbjct: 373 PPPQHPPQLSLQVPLNGPQMDPTKQFLVPMTRACNQWSVV--SMALPL 418


>U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical
           protein K09E3.7 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
 Frame = +1

Query: 409 PTFGGALSPGRNSTAMPRPELPPSMASRATLFGHELLQTRRFTMPTTLTSSQFLIPCRS- 585
           P   G +SPG N+    R     +M  + T+    L Q   F M   L+  +  +     
Sbjct: 575 PNIHGTISPGNNAPINSRVSSLRAMEQQRTVSASTLKQEAVFEMVNGLSYQRGNLTSNGP 634

Query: 586 MSKPVTGSN-AGQQLTIPVFGERWGTPFQQPTTFWDP 693
           +     GSN   +Q   PV+ +    P   PT    P
Sbjct: 635 IPTQFRGSNMEAKQSRFPVWNQHPAMPLSLPTQSTPP 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,422
Number of Sequences: 27780
Number of extensions: 328039
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)