Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0457.Seq
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30530.1 68417.m04334 defense-related protein, putative stron...    28   6.8  
At5g61690.1 68418.m07740 ABC transporter family protein ABC tran...    27   9.0  

>At4g30530.1 68417.m04334 defense-related protein, putative strong
           similarity to defense-related protein [Brassica
           carinata] GI:14009290; contains Pfam profile PF00117:
           glutamine amidotransferase class-I
          Length = 250

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 246 NHSILYKIVEQGLIIGYGKLEFSTSA 323
           N  IL++IV++ L +GY K EF+ +A
Sbjct: 196 NKEILFEIVDRVLALGYVKQEFADAA 221


>At5g61690.1 68418.m07740 ABC transporter family protein ABC
           transport protein, Dictyostelium discoideum, PIR:T18288
          Length = 954

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 656 PHLSPKTGMVSCCPAFEPVTG--LLILRHGIRNWLEVKVVGIVNLRVCKSSCP 504
           P+ + KT  +SC     PVTG   LI    IR+      VGI N+R     CP
Sbjct: 543 PNGAGKTTTISCLTGINPVTGGDALIYGDSIRS-----SVGISNIRKMIGVCP 590


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,267
Number of Sequences: 28952
Number of extensions: 298953
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)