Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0456.Seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   1.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.4  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   1.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   3.3  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   4.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.8  
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...    25   7.7  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   7.7  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 252  QEDLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLS-SITKKRSSSPEVITLTQVGL 425
            +E +  A    +E R+R+E E   + E H     K+ + SITK++    E++   ++ L
Sbjct: 957  EERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRREEMVREKEIRL 1015


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 198  VAHRITSQTIQSTWRTACQEDLKEA 272
            VAH I ++T Q   RT C+ ++KE+
Sbjct: 1293 VAHSIDAKTFQGVVRTFCKSEVKES 1317


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 240 RTACQEDLKEATE-NLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSS 392
           + A +E  K++++ ++   + +KE +RA S E  K  + K+  S  K+ SSS
Sbjct: 34  KEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSS 85


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/93 (22%), Positives = 37/93 (39%)
 Frame = +3

Query: 144 GRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKEATENLDEIRDRKENERAV 323
           GRC+ V         + R+AH++  Q   S    A +E  ++  E+  +   R  +E  +
Sbjct: 351 GRCQEVIGRGAFG--VVRIAHKVDPQNSGSETLYAVKEFRRKPAESQKKYTKRLTSEFCI 408

Query: 324 STEKHKHGIXKKLSSITKKRSSSPEVITLTQVG 422
           S+      +   L  I   +    EV+ L   G
Sbjct: 409 SSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGG 441


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 582 DPWDHQTS*FRQFLVMLSSSFSLTARIFSATRSGPS 475
           +PW +  S  R+F  ++ ++F+    ++SA R+  S
Sbjct: 292 NPWGNSASGTREFSKVIGAAFTFFTILYSAVRAASS 327


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 208 LWATLAIQVDMSCVWLTLRQRPVSRQTLRCFLSRTLFKPQASISVDKYKKHTVV-SMCKF 32
           LW+T+ +++   CV + L    +       +LS  +F       +  Y   T++ S  +F
Sbjct: 688 LWSTIFLRMIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFTVISAYNFSTMIRSSMQF 747

Query: 31  VFFFY*R 11
           V  +Y R
Sbjct: 748 VSLYYIR 754


>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 241 RQVLW---IVCDVILWATLAIQVDMSCVWLTLRQRPVSRQTLRCFLSRTL 101
           RQ LW   I+C VI  A   +Q+D+  V+L    R      +R  L R L
Sbjct: 125 RQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRIL 174


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   ICAFNKKKIRIYTLIQRCVFYIYQHLWM 87
           ICA ++K  RI T+I  C+  +    W+
Sbjct: 152 ICAHDRKTQRIMTVISACLTVLVLAFWI 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,740
Number of Sequences: 5004
Number of extensions: 56681
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)