Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0456.Seq
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576... 32 0.37
02_03_0106 + 15292869-15296138 31 0.84
02_04_0170 + 20576149-20576889 29 4.5
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 28 6.0
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 28 6.0
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 28 7.9
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 28 7.9
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 7.9
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626... 28 7.9
>10_08_0512 +
18455454-18456121,18456214-18456318,18457493-18457615,
18457732-18457902,18458076-18458205,18458458-18458670,
18458757-18458866,18459144-18459186
Length = 520
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -1
Query: 232 LWIVCDVILWATLAIQVDMSCVWLTLRQRPVSRQTLRCFLSRTLFKPQASISVDKYKKHT 53
LWIV + +W + + C+W R++P +++ + I+VD+ ++H
Sbjct: 22 LWIVIGISIWVVIFFILGFMCLWSIYRRKP--KKSFDKIPVSQIPDVSKEIAVDEVREHA 79
Query: 52 VV 47
VV
Sbjct: 80 VV 81
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 144 GRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKE-ATENLDEIRD 299
GR +++++++T + + HR+ ++ W C++ L E ++E L ++D
Sbjct: 308 GRILITTRSEEVATGMKAMVHRVDKMDAENGWALLCRQSLPECSSEELASLKD 360
>02_04_0170 + 20576149-20576889
Length = 246
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 142 VSRQTLRCFLSRTLFKPQASISVDKYKKHTVVSMCKFVFFFY 17
+ T+R L RT AS ++ +Y V S+ F+F FY
Sbjct: 162 IGNMTVRAPLRRTGVLAMASAALKRYNITAVTSLSMFMFMFY 203
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 255 EDLKEATENLDEIRDRKENERAVSTE--KHKHGIXKKLSSITKKRSSSPEVITLTQVGLE 428
ED+ E E +DE D +E+E + TE G+ +K +T+K E++ L G E
Sbjct: 464 EDVVEEVEEVDEEEDEEEDEESDETEGVSKTKGVHQK--DVTEK-GKHAELLALPPHGSE 520
Query: 429 T*ADTVTTD 455
+++D
Sbjct: 521 VYVGGISSD 529
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 198 VAHRITSQTIQSTWRTACQEDLKEATENLDE 290
+AH + T+QS W+ C E K E L +
Sbjct: 320 LAHYLAMATVQSVWQENCMEQFKLVLEALHQ 350
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 255 EDLKEATENLDEIRDRKENERAVSTE--KHKHGIXKKLSSITKKRSSSPEVITLTQVGLE 428
ED+ E E +DE D +E E + TE G+ +K +T+K E++ L G E
Sbjct: 56 EDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVHQK--DVTEK-GKHAELLALPPHGSE 112
Query: 429 T*ADTVTTD 455
+++D
Sbjct: 113 VYVGGISSD 121
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -2
Query: 645 SGTPRLIARHPPASSSSNHFVDPWDHQTS*FRQFLVMLSSSFSLTARIFSATRSGPSMPT 466
SG+P L P +++ F + W+ Q LV+ S S + FS+ R G +
Sbjct: 13 SGSPLL----PALVANAQQFWNEWEIQC------LVLASFSLQVFLHFFSSIRKGNTSRL 62
Query: 465 CTGNRWLLYLLKSRV 421
+ WL YLL V
Sbjct: 63 LSSLLWLAYLLADYV 77
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 530 HRHSL*QLEFFRPRDPVRRC 471
HR +L L F RPR P+ RC
Sbjct: 646 HRKTLASLSFIRPRRPLSRC 665
>01_06_0933 -
33161687-33162205,33162290-33162376,33162459-33162695,
33162778-33162886,33162997-33163313,33163398-33163607,
33165380-33165901
Length = 666
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 530 HRHSL*QLEFFRPRDPVRRC 471
HR +L L F RPR P+ RC
Sbjct: 619 HRKTLASLSFIRPRRPLSRC 638
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,576,314
Number of Sequences: 37544
Number of extensions: 391370
Number of successful extensions: 1189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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