Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0456.Seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)           38   0.006
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   31   0.86 
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              30   2.0  
SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)                    30   2.0  
SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06)         29   2.6  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     29   2.6  
SB_36903| Best HMM Match : p450 (HMM E-Value=0)                        29   3.5  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   4.6  
SB_54825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)                    28   6.1  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)                 28   8.0  

>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
          Length = 1879

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
 Frame = +3

Query: 57  CFLYLSTLMDA*GLNNVRERKHRRVWRLTGRCRRVSQTQDIST*IARVAHRITSQTIQST 236
           C L L   + A  L   R+   +    L+    R+ + +  +   AR   +   +  +  
Sbjct: 37  CALLLEQQVQARDLQRERKMVEKMNIELSNARERIQKEKGSTKTTARELRKANKRAAKFE 96

Query: 237 WRTAC-QEDLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSSPEVITLT 413
            +  C +E+LK   + L ++     N   VST +    I KK S   KK+S+SPE+ T  
Sbjct: 97  IQVNCLKEELKSLNKQLKQVSSG--NSLKVSTVRRMTQIKKKPSQRDKKQSASPEIDTAH 154

Query: 414 QVGLET*ADTVTTDYQ 461
            +G    +D+  +DY+
Sbjct: 155 LLGES--SDSDLSDYE 168


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/103 (23%), Positives = 50/103 (48%)
 Frame = +3

Query: 102  NVRERKHRRVWRLTGRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKEATEN 281
            N  +RK      + G+  R+S ++       + +  I    ++ + R A +E L+ ++EN
Sbjct: 1120 NYNDRKRDGKKGIDGKRERLSSSRSDDF---QQSKMIKHSHLEKSLRQAMRE-LEHSSEN 1175

Query: 282  LDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSSPEVITL 410
              E   RK  ++ +   K+KHG+  K    ++KR    +V+++
Sbjct: 1176 SSEEEKRKVRKKKLVEFKNKHGLDVKKMDESEKRKKVQQVMSM 1218


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +3

Query: 114 RKHRRVWRLTGRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQ---EDLKEATENL 284
           +K R +    G C    +   +   IARV HR+T +++   W   CQ     LK A    
Sbjct: 20  KKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTEKSVPFEWTDECQTAFTSLKTALTTA 79

Query: 285 DEIR-DRKENERAVSTEKHKHGIXKKLSSI 371
             +     E +  + T+     I  +LS +
Sbjct: 80  PVLAYPTAEGDSVLDTDASADSIDAELSQV 109


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/100 (23%), Positives = 46/100 (46%)
 Frame = +3

Query: 96  LNNVRERKHRRVWRLTGRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKEAT 275
           L ++  ++ + + RL  R + + +        +     +  Q +++   T  QE LK A 
Sbjct: 233 LAHLERKQMKEMQRLERRRQNIERRTSTVQEHSEKQQAVLEQCLKTRRNTLYQEFLK-AE 291

Query: 276 ENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSSP 395
           E +  +R++KE E     +KH+  I  + +S+   R S P
Sbjct: 292 EFMQHLREKKERELNEWRQKHER-IRSRTNSLPAFRRSHP 330


>SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)
          Length = 631

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 392 PRSDYSNPSRTRDLSRYSNHR---LPVQVGIDGPDLVAEKIRAVKENDDDSITRNC 550
           PR  +S P R  DL  Y  +      ++  + GPD        VKE DDD+  + C
Sbjct: 563 PRGAFSAPDRV-DLKAYRGYEDDDYSIESLVIGPDYSTLSNDEVKEKDDDTTEKEC 617


>SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06)
          Length = 309

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 359 VIINYKKTQFLPRSDYSNPSRTRDLSRYSNHRLP 460
           + +N + T+F+PR  Y    R  DL  +   +LP
Sbjct: 269 IYVNVRVTRFVPRYKYIRDERNLDLDAFKQEQLP 302


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 183 T*IARVAHRITSQ-TIQSTWRTACQEDLKEATENLDEIRDRKENERAVSTEKHKHGIXKK 359
           T +++VA  +    T +S W      + ++  + + E  + K+N++  S+ K K    K 
Sbjct: 570 TEVSKVAGEMWKNLTDKSKWEEKAAIEKQKYVQRMKEYNENKKNDKEESSPKKKSPSKKA 629

Query: 360 LSSITKKRSSSP 395
             +  +++SSSP
Sbjct: 630 SKAPKEEKSSSP 641


>SB_36903| Best HMM Match : p450 (HMM E-Value=0)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
 Frame = +3

Query: 252 QEDLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSSPEVITLTQVGLET 431
           Q DL+      DE+ DRK NE     E ++ G  + L+    K     +VI +  +  E 
Sbjct: 160 QRDLEYVRITRDELLDRKLNEH---RETYEEGNIRDLTDALIKALEEAKVIMVVTLNPEV 216

Query: 432 *A-------DTVTTDYQYKWASTDRISWPKKF--ELLKRMTMIAL 539
            A       D +  D   +W   DR+ + +    E L+  +++AL
Sbjct: 217 QARVHAELDDVIGRDVMPRWEDKDRLPYLEAVIAETLRLSSVVAL 261


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 96   LNNVRER-KHRRVWRLTGRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKEA 272
            LN+++ER + R+  +  G    V+  Q+++  +A  A R          + A + DLKE 
Sbjct: 2793 LNDLQERYEKRQAEQEMGSKNTVTSKQELTIAMATAADRQKVIYSLEQEKQALEHDLKET 2852

Query: 273  TENLDEIRDRKENERAVSTE 332
             ++L  +RD  E  +  + E
Sbjct: 2853 RKSLSGVRDDLERVKREARE 2872


>SB_54825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 640 NAATHCAAPAGFFVVKPFRRPLGSSDVLVPAISRNAIIVI 521
           NA   CA   G   V+P R+ L S D  +P   R++ I++
Sbjct: 9   NAGWCCAVCTGLLSVRPPRKQLTSRDKYIPRHGRDSRILV 48


>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
          Length = 763

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 264 KEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKR 383
           K   E LD+ +DR EN  A    +   GI +KL   TKKR
Sbjct: 467 KRLKEKLDK-QDRPENCPAAKATRVNPGIWRKLREHTKKR 505


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 597 SNHFVDPWDHQTS*FRQFLVMLSSSFSLTARIFSATRSGPS 475
           S+ + DPW   TS  R+     SSS+S  +R  S++ SG S
Sbjct: 173 SDEWHDPWQRTTSPKRRSPRRSSSSYSSRSRSSSSSSSGSS 213


>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 504  FELLKRMTMIALREIAGTRTSDDPKGLRNGLTTKKPAGAAQ 626
            F+LLK +  I +  I    T D+   +  G+T K P GA Q
Sbjct: 1032 FDLLKELYRILIEPIEKELTQDEVVFVPEGVTFKVPFGALQ 1072


>SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)
          Length = 197

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 204 HRITSQTIQSTWRTACQEDLKEATENLDEIRDRKENE 314
           HR+  Q  + +W    +ED +E  ENL E    K+ E
Sbjct: 114 HRMQDQPRRKSWEDTPEEDEEEDDENLTEEERLKKKE 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,364,874
Number of Sequences: 59808
Number of extensions: 441820
Number of successful extensions: 1263
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)