Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0456.Seq
(682 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC131735-1|AAI31736.1| 2371|Homo sapiens neuroblastoma-amplified... 33 0.71
BC051792-1|AAH51792.2| 1418|Homo sapiens NAG protein protein. 33 0.71
AF388385-1|AAM93544.1| 2371|Homo sapiens neuroblastoma-amplified... 33 0.71
BC130418-1|AAI30419.1| 1153|Homo sapiens ARID4B protein protein. 30 8.8
BC104632-1|AAI04633.1| 432|Homo sapiens ARID4B protein protein. 30 8.8
BC062536-1|AAH62536.1| 428|Homo sapiens ARID4B protein protein. 30 8.8
BC048959-1|AAH48959.1| 569|Homo sapiens ARID4B protein protein. 30 8.8
AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protei... 30 8.8
AL391994-7|CAI13752.1| 1071|Homo sapiens AT rich interactive dom... 30 8.8
AL391994-6|CAI13751.1| 1226|Homo sapiens AT rich interactive dom... 30 8.8
AL391994-4|CAI13749.1| 483|Homo sapiens AT rich interactive dom... 30 8.8
AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive dom... 30 8.8
AL391994-1|CAI13746.1| 927|Homo sapiens AT rich interactive dom... 30 8.8
AL133418-7|CAI22963.1| 1071|Homo sapiens AT rich interactive dom... 30 8.8
AL133418-6|CAI22962.1| 1226|Homo sapiens AT rich interactive dom... 30 8.8
AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive dom... 30 8.8
AL133418-1|CAI22958.1| 927|Homo sapiens AT rich interactive dom... 30 8.8
AF214114-1|AAF28341.2| 1226|Homo sapiens retinoblastoma-binding ... 30 8.8
AF208045-1|AAF23433.3| 1213|Homo sapiens breast cancer-associate... 30 8.8
AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein ... 30 8.8
>BC131735-1|AAI31736.1| 2371|Homo sapiens neuroblastoma-amplified
protein protein.
Length = 2371
Score = 33.5 bits (73), Expect = 0.71
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 258 DLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSSPE 398
D EAT L ++ D+ E +VS KHG+ K +S + +SSS E
Sbjct: 1025 DKTEATTKLHDMVDQLEQILSVSELLEKHGLEKPISFVKNTQSSSEE 1071
>BC051792-1|AAH51792.2| 1418|Homo sapiens NAG protein protein.
Length = 1418
Score = 33.5 bits (73), Expect = 0.71
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 258 DLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSSPE 398
D EAT L ++ D+ E +VS KHG+ K +S + +SSS E
Sbjct: 72 DKTEATTKLHDMVDQLEQILSVSELLEKHGLEKPISFVKNTQSSSEE 118
>AF388385-1|AAM93544.1| 2371|Homo sapiens neuroblastoma-amplified
protein protein.
Length = 2371
Score = 33.5 bits (73), Expect = 0.71
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 258 DLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSSSPE 398
D EAT L ++ D+ E +VS KHG+ K +S + +SSS E
Sbjct: 1025 DKTEATTKLHDMVDQLEQILSVSELLEKHGLEKPISFVKNTQSSSEE 1071
>BC130418-1|AAI30419.1| 1153|Homo sapiens ARID4B protein protein.
Length = 1153
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>BC104632-1|AAI04633.1| 432|Homo sapiens ARID4B protein protein.
Length = 432
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>BC062536-1|AAH62536.1| 428|Homo sapiens ARID4B protein protein.
Length = 428
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>BC048959-1|AAH48959.1| 569|Homo sapiens ARID4B protein protein.
Length = 569
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protein
180 protein.
Length = 1312
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AL391994-7|CAI13752.1| 1071|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1071
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AL391994-6|CAI13751.1| 1226|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1226
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AL391994-4|CAI13749.1| 483|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 483
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 256 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 299
>AL391994-1|CAI13746.1| 927|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 927
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 63 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 106
>AL133418-7|CAI22963.1| 1071|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1071
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AL133418-6|CAI22962.1| 1226|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1226
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 256 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 299
>AL133418-1|CAI22958.1| 927|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 927
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 63 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 106
>AF214114-1|AAF28341.2| 1226|Homo sapiens retinoblastoma-binding
protein 1-like 1 protein.
Length = 1226
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AF208045-1|AAF23433.3| 1213|Homo sapiens breast cancer-associated
antigen BRCAA1 protein.
Length = 1213
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 258 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 301
>AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein
protein.
Length = 1325
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 SQTIQSTWRTACQED--LKEATENLDEIRDRKENERAVSTEKHK 341
S+TI + W+T +ED EA E +E D KE E S E+ +
Sbjct: 271 SRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEE 314
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,221,481
Number of Sequences: 237096
Number of extensions: 2045330
Number of successful extensions: 8775
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8775
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -