Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0456.Seq
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 31 0.93
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 30 1.2
At4g15030.1 68417.m02309 expressed protein 30 1.6
At3g50370.1 68416.m05508 expressed protein 28 5.0
At1g66540.1 68414.m07560 cytochrome P450, putative Similar to cy... 28 5.0
At2g40630.1 68415.m05011 expressed protein 28 6.6
At5g42660.1 68418.m05197 expressed protein contains Pfam profile... 27 8.7
At2g33420.1 68415.m04096 expressed protein 27 8.7
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo... 27 8.7
At2g02440.1 68415.m00183 hypothetical protein 27 8.7
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 27 8.7
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +3
Query: 39 HIDTTVCFLYLSTLMDA*GLNNVRERKHRRVWRLTGRCRRVSQTQDIST*IARVAHRITS 218
H+ + Y+S+ D G NV RKHRR R+ Q D AHR+ S
Sbjct: 1044 HLSVSDLLDYISSDPDTKG--NVAHRKHRRA--------RILQVNDKVASADDDAHRVAS 1093
Query: 219 QTIQSTWRTACQEDLKEATENLDE 290
Q TW + D+ ++ +++
Sbjct: 1094 QIDIVTWNNVAEADVTKSRSEVND 1117
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/111 (27%), Positives = 47/111 (42%)
Frame = +3
Query: 294 RDRKENERAVSTEKHKHGIXKKLSSITKKRSSSPEVITLTQVGLET*ADTVTTDYQYKWA 473
+ +K+ AV EK + KK+ S S S E +V + A + +D +
Sbjct: 39 KQKKDVIAAVQKEKAVKKVPKKVESSDDSDSESEEEEKAKKVPAKKAASS--SDESSDDS 96
Query: 474 STDRISWPKKFELLKRMTMIALREIAGTRTSDDPKGLRNGLTTKKPAGAAQ 626
S+D PKK T +A + + +SDD TKKPA AA+
Sbjct: 97 SSDDEPAPKKAVAATNGT-VAKKSKDDSSSSDDDSSDEEVAVTKKPAAAAK 146
>At4g15030.1 68417.m02309 expressed protein
Length = 179
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 246 ACQEDLKEATENLDEIRDRKENERAVSTEKHK 341
AC+ + ++ DE RKE ER+ S EK K
Sbjct: 94 ACERSKSHSEDDTDEEEKRKEGERSESNEKKK 125
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +3
Query: 207 RITSQTIQSTWRTACQEDLKEATENLDEIRDRKENER---AVSTEKHKHGIXKKLSSITK 377
R+ + ++ +R QE L EAT +E+R KE E+ + E+ K +KL + +
Sbjct: 518 RLEEEAREAAFRNE-QERL-EATRRAEELRKSKEEEKHRLFMEEERRKQAAKQKLLELEE 575
Query: 378 KRSSSPEVITLTQVGLET*ADTVTTDYQYKWASTDRISWPKKFELLKRMT 527
K S T ++ D + S D + W ++ R+T
Sbjct: 576 KISRRQAEAAKGCSSSSTISEDKFLDIVKEKDSADVVDWEDSERMVDRIT 625
>At1g66540.1 68414.m07560 cytochrome P450, putative Similar to
cytochrome P450 91A1 (SP:Q9FG65)[Arabidopsis thaliana];
contains Pfam profile: PF00067: Cytochrome P450
Length = 386
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +3
Query: 237 WRTACQEDLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSS--ITKKRSSSPEVITL 410
W T + +K+ LDE R +E+ V+ EK ++ + L S +++ + I
Sbjct: 120 WITDFERRVKKIAARLDEFFQRLVDEKRVAKEKKENTMIDHLLSLQVSQPEYYTDHTIKG 179
Query: 411 TQVGLET*ADTVTTDYQYKWASTDRISWPKKFELLKRM 524
T + L A T T+ +WA + ++ P E+LK++
Sbjct: 180 TMLSLIL-AGTDTSAVTLEWALSSLLNNP---EVLKKV 213
>At2g40630.1 68415.m05011 expressed protein
Length = 535
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 210 ITSQTIQSTWRTACQEDLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITKKRSS 389
+ + T+ S W Q+DL + + R+R +N ++TE ++ SS +++
Sbjct: 363 VEAATVASQWLEFLQQDLSGRLSAVQDSRNRVQN--ILTTELPLLASSRESSS---NQAN 417
Query: 390 SPEVITLTQVGLET*ADTVTTDYQYKW-ASTDRIS 491
S E++T G + T +Q +W A D+I+
Sbjct: 418 SLEMVTTNTSGDASSDKAATETHQKRWTAKFDQIN 452
>At5g42660.1 68418.m05197 expressed protein contains Pfam profile
PF04765: Protein of unknown function (DUF616)
Length = 463
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/69 (20%), Positives = 32/69 (46%)
Frame = +3
Query: 198 VAHRITSQTIQSTWRTACQEDLKEATENLDEIRDRKENERAVSTEKHKHGIXKKLSSITK 377
+AHR+ S W + + ++ LD + R + A+S + + + +++ K
Sbjct: 295 LAHRLFPDAKYSIWVDSKSQFRRDPLGVLDALLWRTNSVLAISEHGARSSVYDEANAVIK 354
Query: 378 KRSSSPEVI 404
K ++PE +
Sbjct: 355 KHKATPEEV 363
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 658 SSGKLWNAATHCAAPAGFFVVKPF--RRPLGSSDVL 557
S G + ++A H + AGF V+P RRPL S++++
Sbjct: 146 SPGGMNSSAGHISPGAGFLTVQPSRPRRPLTSAEIM 181
>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985];
T20K24.13 has been merged with T20K24.12 per suggestion
of Dr. Kristian Axelsen (axe@biobase.dk)
Length = 1172
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +3
Query: 141 TGRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKEATENLDE 290
+G C + Q +DI + + H +T I+ + C+ ++ E + E
Sbjct: 867 SGHCEKKKQAEDIVVPVQIIGHALTHVEIELQTKETCKTSCCDSKEKVKE 916
>At2g02440.1 68415.m00183 hypothetical protein
Length = 138
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 203 GDSGNSGRYVLCLADSTTTTGEPPDPPVFSFSDIIQTSSIHK 78
GD G+S Y+L ST TT + PD + ++ HK
Sbjct: 96 GDGGDSENYMLTEDQSTKTTDKKPDTEALMAENQSTKTTDHK 137
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 195 RVAHRITSQTIQSTWRTACQEDLKEATEN-LDEIRDRKEN-------ERAVSTEKHKHGI 350
R A+ + + S + + QE LK+ + LDE+RD E+ E+ TE +
Sbjct: 208 RRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRY 267
Query: 351 XKKLSSITKKRSSSPE 398
K+L + KKR+ +
Sbjct: 268 KKELYDLVKKRTQDED 283
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,359
Number of Sequences: 28952
Number of extensions: 307955
Number of successful extensions: 984
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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