Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0455.Seq
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 46 5e-06
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 42 1e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 8e-04
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 38 0.001
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 37 0.002
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 0.003
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 36 0.006
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 36 0.006
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 35 0.010
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 33 0.030
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 33 0.039
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.090
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.12
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.16
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 31 0.21
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.64
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 29 0.84
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 28 1.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 27 2.6
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.6
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 27 3.4
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 3.4
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c... 27 3.4
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.5
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 46.0 bits (104), Expect = 5e-06
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCPKCRSKIKSSRGYH 370
T CGH++C+ CL+ L+ S CP C++K+ + Y+
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYY 1140
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 41.5 bits (93), Expect = 1e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 260 ATKCGHVFCATCLKTTLERQSDCPKCRS 343
AT+CGH+FC +C+ ++S+CP CR+
Sbjct: 268 ATECGHIFCWSCINGWTSKKSECPLCRA 295
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 38.7 bits (86), Expect = 8e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCPKCRSKI 349
T CGH +C CL L+ CP CR K+
Sbjct: 98 THCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 260 ATKCGHVFCATCLKTTLERQSDCP--KCRSKI 349
A KCGH+FC+TC K ++ CP CR +I
Sbjct: 164 AAKCGHLFCSTCAKELRKKTVPCPVQHCRKRI 195
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCPKCRSKIKSSR 361
T C H FC+ C++ L CP CR+ + SR
Sbjct: 42 TSCSHTFCSFCIRDYLREHPMCPACRAPEQESR 74
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKIKS 355
CGH FC CL L + CP CR + S
Sbjct: 184 CGHTFCGPCLMQALTQSPQCPTCRFGLPS 212
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 260 ATK--CGHVFCATCLKTTLERQSDCPKCRSKI 349
ATK CGH+F CL+ LE CP CR ++
Sbjct: 122 ATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 35.9 bits (79), Expect = 0.006
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKI 349
CGH+ CL+ LERQ CP CR +
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSV 354
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 260 ATKCGHVFCATC---LKTTLERQSDC 328
ATKCGHV+C +C LKT+ QS C
Sbjct: 209 ATKCGHVYCGSCAKVLKTSKRSQSKC 234
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 33.5 bits (73), Expect = 0.030
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 269 CGHVFCATCLKTTLE-RQSDCPKCRSKIKSS 358
CGH FC+ C++ E + S CP+C + S
Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQCETPFSVS 685
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 33.1 bits (72), Expect = 0.039
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 263 TKCGHVFCATCLKT---TLERQSDCPKCRSKIKSSR 361
T CGH+FC C+ + T CP CR K+ ++
Sbjct: 219 TPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNK 254
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.9 bits (69), Expect = 0.090
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD-CPKCRSK 346
C HVFC CL +++ D CP CR+K
Sbjct: 375 CSHVFCLHCLIILQKQKVDFCPLCRAK 401
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.5 bits (68), Expect = 0.12
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLE--RQSDCPKCRSKIK 352
T CGH +C C+ + L+ CP C+ +I+
Sbjct: 211 TDCGHTYCYACIMSRLKLVNNVSCPICKHRIR 242
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 269 CGHVFCATCLKTTLE-RQSDCPKC 337
CGH FC C++ +E RQ CP C
Sbjct: 643 CGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 260 ATKCGHVFCATCLKTTLERQSDCPKCRSKIK 352
AT CGH FC C T + C +C + K
Sbjct: 266 ATTCGHHFCEQCAITRYRKTPTCIQCGADTK 296
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCPKCR 340
T C H++ CL +E +S CP CR
Sbjct: 645 TPCHHLYHRQCLLQWMETRSICPVCR 670
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 28.7 bits (61), Expect = 0.84
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 269 CGHVFCATCLKTT-LERQSDCPKCRSK 346
C +FC C++T L+ +CP C K
Sbjct: 298 CDKLFCEECIQTALLDSDFECPNCHRK 324
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSK 346
CGH F CL++ + CP CR++
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTE 81
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 497 FVKRWLSIIFKSSNYSRISWNAGSRXG 577
F K +L FKS +Y++ISW R G
Sbjct: 849 FNKSYLKQFFKSRDYNQISWMHDMRLG 875
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 308 LERQSDCPKCRSKIKS 355
LE + DCPKC SKI S
Sbjct: 283 LEGRFDCPKCNSKIGS 298
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 430 LSPRTISSIVVAKLEILMWSIRIR-EEMAKYHFQVKQLFQDILE 558
LS T SS+ L+ + ++ + MAK H Q+ QL QD +E
Sbjct: 68 LSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVE 111
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 263 TKCGHVFCATCLK 301
T+CGHV C +CL+
Sbjct: 190 TRCGHVSCQSCLR 202
>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 499 REEMAKYHFQVKQLFQDILECRES 570
R+EM H QV+QLF D+ + S
Sbjct: 111 RQEMVALHSQVEQLFSDVERLKTS 134
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLE 313
++CGHV+C +CL +E
Sbjct: 228 SRCGHVYCFSCLLRFVE 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,017
Number of Sequences: 5004
Number of extensions: 48581
Number of successful extensions: 135
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -