Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0455.Seq
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56584| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 46 3e-05
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 46 3e-05
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 43 3e-04
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 40 0.003
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 37 0.014
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 37 0.014
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 37 0.018
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 36 0.041
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 35 0.055
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 35 0.055
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.17
SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10) 33 0.22
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 33 0.29
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 32 0.39
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 32 0.39
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.39
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.39
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 32 0.51
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013) 32 0.51
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 31 0.67
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 31 0.67
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 31 0.67
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 31 0.67
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 0.89
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 31 0.89
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 0.89
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 31 0.89
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 31 0.89
SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09) 31 1.2
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061) 30 1.6
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 30 1.6
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 29 3.6
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 29 3.6
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 3.6
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 29 4.8
SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07) 28 6.3
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05) 28 8.3
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21) 28 8.3
>SB_56584| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 158
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLE-RQSDCPKCRSKIKSSRGYHAIYL 382
TKC HVFC CLKT + RQ CPKC + S +H +YL
Sbjct: 119 TKCFHVFCYECLKTRYDTRQRKCPKCNATF-GSNDFHKMYL 158
>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 406
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLE-RQSDCPKCRSKIKSSRGYHAIYL 382
TKC HVFC CLKT + RQ CPKC + S +H +YL
Sbjct: 367 TKCFHVFCYECLKTRYDTRQRKCPKCNATF-GSNDFHKMYL 406
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCPKCRSKI 349
T CGHVFC CL +L+ + CP CRS +
Sbjct: 392 TPCGHVFCRACLNRSLDHRPGCPICRSSL 420
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQ--SDCPKCRSKIKS 355
T CGH FC +CL+T L R CP CRS + S
Sbjct: 31 TICGHSFCESCLETWLSRPEVQSCPSCRSHVLS 63
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 37.1 bits (82), Expect = 0.014
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKI 349
C H+FC C+ +R+ CP CR+++
Sbjct: 499 CKHIFCEDCISLWFDREQTCPMCRARV 525
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKIKSSRGYHAIYLDTS 391
C H FC CL++ L +++ CP CR ++ S+ +I LD +
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPICRCAVQ-SQPVRSIVLDNA 425
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 36.7 bits (81), Expect = 0.018
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKI 349
CGH FC CL +L+ + +CP CR+ +
Sbjct: 345 CGHSFCRDCLYRSLDHRVECPCCRAPL 371
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKI 349
CGH +C C+K + +C KC KI
Sbjct: 37 CGHTYCLACIKDEFTGK-NCKKCGFKI 62
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 35.5 bits (78), Expect = 0.041
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD-CPKCRSKIK 352
CGH+ C CL+ E+ D CP CRS IK
Sbjct: 200 CGHLMCHLCLEQWQEKGGDGCPFCRSPIK 228
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 35.1 bits (77), Expect = 0.055
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQS---DCPKCRSKIKSS 358
T+C HVFC CL +E + CP CR+ + +
Sbjct: 78 TRCAHVFCTGCLTDVIENEGLAPRCPMCRAPVNQN 112
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 35.1 bits (77), Expect = 0.055
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCR 340
CGH +C CL LE + CP CR
Sbjct: 280 CGHKYCEPCLSRWLENNTTCPICR 303
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 34.3 bits (75), Expect = 0.096
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD-CPKCRSKIK 352
CGH+ C CL+ E+ D CP CRS +K
Sbjct: 396 CGHLMCHLCLEQWQEKGGDGCPFCRSPMK 424
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 260 ATKCGHVFCATCLKTTLER---QSDCPKCRSKIKSS 358
AT C H FC C+ L++ +S CP C++ I S+
Sbjct: 172 ATPCDHYFCVLCICEWLDQTYNKSGCPVCKASISSN 207
>SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)
Length = 169
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSD--CPKCRSKIKSSRGY 367
T+C H FC +C+ T L+ D CP C + I + +
Sbjct: 78 TECLHTFCKSCIVTYLQDSEDNTCPSCNTVIHETNPF 114
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKI 349
CGH+FC C+K R C CR I
Sbjct: 86 CGHMFCFLCIKGVALRSRKCAICRQPI 112
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD----CPKCRSKIKSS 358
C H +C CL++ +E + CP+CR KI+ S
Sbjct: 32 CLHTYCRHCLESLVEHSKECTVSCPQCREKIEIS 65
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD----CPKCRSKIKSS 358
C H +C CL++ +E + CP+CR KI+ S
Sbjct: 31 CLHTYCRHCLESLVEHSKECTVSCPQCREKIEIS 64
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD----CPKCRSKIKSS 358
C H +C CL++ +E + CP+CR KI+ S
Sbjct: 41 CLHTYCRHCLESLVEHSKECTVSCPQCREKIEIS 74
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKIKSSRG 364
CGH FC C+ + CP CR +G
Sbjct: 694 CGHTFCRPCITEASKSSKLCPTCRDPFGVQQG 725
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 269 CGHVFCATCLKTTLE---RQSDCPKCRSKIKSSR 361
CGH+FC CL LE +S CP C++ I +
Sbjct: 78 CGHLFCWPCLHRWLETRPNRSMCPVCKAGISKEK 111
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKIKSSRG 364
CGH FC C+ + CP CR +G
Sbjct: 769 CGHTFCRPCITEASKSSKLCPTCRDPFGVQQG 800
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 31.9 bits (69), Expect = 0.51
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 266 KCGHVFCATCLKTTLERQSDCPKCRSKIKSSRGY 367
+C H FC +C+ + L+ CP C +++ +R +
Sbjct: 1381 ECLHSFCRSCIVSWLQASYHCPVCDTEVHKTRPF 1414
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 275 HVFCATCLKTTLERQSDCPKCRSKIKSSR 361
HVFC+ CL L CP CR+ I +
Sbjct: 120 HVFCSPCLDLWLRTNRYCPTCRTPINQDQ 148
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCP 331
T CGHVFC+ CL + CP
Sbjct: 70 TTCGHVFCSQCLVHWIAENGTCP 92
>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
Length = 499
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCPKCRSKIKSS 358
T+C +FC+ C+ L C CRS ++ S
Sbjct: 345 TQCDQIFCSGCITAWLRNAGACSSCRSVLEVS 376
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 269 CGHVFCATCLKTTLER-QSD---CPKCRSKIKSS 358
C H +C CL++ E Q D CP+CR KI+ S
Sbjct: 31 CLHTYCRHCLESLAEHSQGDSISCPQCREKIQIS 64
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 269 CGHVFCATCLKTTL---ERQSDCPKCRSKIKSSR 361
CG +FC CL L +R DCP C + +SR
Sbjct: 800 CGRMFCRQCLGVMLKDADRTIDCPICTRRSNTSR 833
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 260 ATKCGHVFCATCLKTTLER---QSDCPKCRSKI 349
AT C H FC C+ L++ +S CP C++ I
Sbjct: 172 ATPCDHYFCVLCICEWLDQTYNKSGCPVCKASI 204
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 260 ATKCGHVFCATCLKTTLER---QSDCPKCRSKI 349
AT C H FC C+ L++ +S CP C++ I
Sbjct: 46 ATPCDHYFCVLCICEWLDQTYNKSGCPVCKASI 78
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 260 ATKCGHVFCATCLKTTLER---QSDCPKCRSKI 349
AT C H FC C+ L++ +S CP C++ I
Sbjct: 172 ATPCDHYFCVLCICEWLDQTYNKSGCPVCKASI 204
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD----CPKCRSKI 349
C H +C CL++ +E + CP+CR KI
Sbjct: 32 CLHTYCRHCLESLVEHSQERTVSCPQCREKI 62
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 266 KCGHVFCATCLKTTLERQSDCPKCRSKIKSSR 361
+C H FC C+ LE CP C ++I +R
Sbjct: 63 ECLHSFCRCCIVRYLETSYRCPVCDAEIHKTR 94
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD----CPKCRSKI 349
C H +C CL++ +E + CP+CR KI
Sbjct: 32 CLHTYCRHCLESLVEHSQERTVSCPQCREKI 62
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQ--------SDCPKCRSKI 349
T CGH FC CL+T + + + CP CR+ +
Sbjct: 31 TPCGHSFCGVCLETWMNAKLEENEKCPASCPSCRADL 67
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 266 KCGHVFCATCLKTTLERQSDCPKCRSKIKSSR 361
+C H FC C+ LE CP C ++I +R
Sbjct: 31 ECLHSFCRCCIVRYLETSYRCPVCDAEIHKTR 62
>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
Length = 207
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQS---DCPKCRSK 346
T C H FC CL L ++S CP CR K
Sbjct: 82 TACLHSFCKECLHKMLSKRSKYIHCPLCRKK 112
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD----CPKCRSKIKSSRG 364
C H C CL+ R+S CP CRS+I RG
Sbjct: 36 CMHDLCRKCLEDMAARESSRVIRCPLCRSEIDIPRG 71
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 263 TKCGHVFCATCLKTTLERQSDCPKC 337
T CGHV C C ++ CP C
Sbjct: 31 TGCGHVLCTKCYNKRSKKHLGCPLC 55
>SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061)
Length = 63
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKIKSSRGYHAIYL 382
C HV C C TL + CP+C + I S IYL
Sbjct: 27 CWHVHCEECWLRTLGAKKLCPQC-NMITSPNDLRKIYL 63
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCP 331
C H FCA+C +E DCP
Sbjct: 81 CMHSFCASCYSQWMEHSRDCP 101
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKI 349
C H+F C+ LE+ + CP CR ++
Sbjct: 80 CDHLFHPGCILPWLEKTNSCPVCRHEL 106
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKIKSS-----RGYHAIYLDTSSF*NTPQWPSKW 427
CGH C C L + CP C ++ + + +H + +W KW
Sbjct: 447 CGHRVCTKCYTKLLSSSARCPGCMDELNENIPDIDKAFHEEIQELDVKCRNVEWNCKW 504
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSK 346
CGH C+TC K + CP+CR +
Sbjct: 46 CGHSCCSTCAKRVNRK---CPECREE 68
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSDCPKCRSKIKSS 358
CGH FC C + + CP C+ ++K++
Sbjct: 255 CGHTFCQMCTRDCRK----CPDCQMRVKAT 280
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD---CPKCR 340
C H FC C+ E Q D CP C+
Sbjct: 351 CSHTFCTECIMKIKELQGDVVECPTCK 377
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD---CPKCRSK 346
CGH C CL+ +R CP CRS+
Sbjct: 39 CGHSVCLQCLQNMTKRNPPSLLCPVCRSE 67
>SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)
Length = 137
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +2
Query: 266 KCGHVFCATCLKTTLER-QSDCPKC 337
+CGH C C KT + CPKC
Sbjct: 70 ECGHRLCQHCYKTIWRSPEPKCPKC 94
>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
Length = 314
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 397 LKYTTMALKMDLSPRTIS-SIVVAKLEILMWSIRIREEMAKYHFQVKQLFQDILEC 561
LK T+ L+ R+IS S +++K++ + + + A + V Q F+DI+EC
Sbjct: 186 LKPYTLPTFRSLTDRSISTSALISKVQDRLTPVGLGFFQASWDDSVTQTFRDIIEC 241
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = +2
Query: 266 KCGHVFCATCLKTTLERQSD-----CPKCRSKIK 352
+C H FC C++ L + + CP+CR++++
Sbjct: 34 RCYHSFCLRCVQELLHQSGEKGVVKCPQCRTEME 67
>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD------CPKCRSKIK 352
C H +CA C+ ++ SD CP+CRS K
Sbjct: 291 CLHHYCAKCIDPWIKTCSDQGINSTCPECRSPFK 324
>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
Length = 645
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +2
Query: 269 CGHVFCATCLKTTLERQSD---CPKCRSK 346
C H FC CL+ T + CP CR+K
Sbjct: 37 CFHTFCKECLEKTKQSFRGNLLCPTCRTK 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,072,527
Number of Sequences: 59808
Number of extensions: 370406
Number of successful extensions: 861
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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