Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0454.Seq
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1255 + 25636634-25636956,25637462-25637894                       29   4.2  
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137...    29   5.6  
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720...    29   5.6  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    28   9.8  

>08_02_1255 + 25636634-25636956,25637462-25637894
          Length = 251

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 638 RXPTWPPSRXQ-HAAFENLVPANIN*APISFQSPR 537
           R PT+PP R   HA   +L P + N A  SF+SPR
Sbjct: 204 REPTFPPPRLSLHAQKSSLTPRSSNPAS-SFRSPR 237


>12_02_0330 -
           17612867-17613161,17613376-17613459,17613554-17613744,
           17614085-17614995,17615081-17615252,17615337-17615412,
           17615515-17615634,17615841-17616005,17616096-17616186,
           17616644-17616785,17616848-17617042,17617132-17617185,
           17617299-17617397,17618181-17618296,17618376-17618442
          Length = 925

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 486 GTCDGASDRDPXGRRCSSWTLERNWSLINVRWDEVFKGCVLXP*RRPCWXPESA 647
           GT  G  D DP G     W  +  W  + VRWDE     V  P R   W  E A
Sbjct: 353 GTIVGVGDSDPSG-----WA-DSKWRSLKVRWDEA--ASVPRPDRVSPWQIEPA 398


>11_05_0004 -
           18269416-18269473,18270319-18270509,18271061-18272004,
           18272083-18272254,18272332-18272407,18272498-18272617,
           18272795-18272959,18273048-18273138,18273673-18273757,
           18273873-18274043,18274151-18274207,18274290-18274385,
           18275223-18275365,18275464-18275530
          Length = 811

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 486 GTCDGASDRDPXGRRCSSWTLERNWSLINVRWDEVFKGCVLXP*RRPCWXPESA 647
           GT  G  D DP G     W  E  W  + VRWDE     +  P R   W  E A
Sbjct: 335 GTIVGMGDSDPAG-----WP-ESKWRSLKVRWDEA--SSIPRPERVSPWQIEPA 380


>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 691  RSNVKRXTEQVXXNXADSGXQHGRLQGNNTQPLKTSS 581
            RSN  + T Q+     ++G QHG  +   + P  TSS
Sbjct: 1240 RSNASKLTAQLKRGNVENGGQHGITKQAISNPADTSS 1276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,808,776
Number of Sequences: 37544
Number of extensions: 376878
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)