Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0454.Seq
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)                   29   5.7  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)
          Length = 319

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 138 LAGWGIVTYKIVLVLYLHSMTNKYVIS 58
           LAG G V Y I+    LH+ +N Y++S
Sbjct: 28  LAGNGAVAYVIIRTFRLHTASNAYILS 54


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 95   NTSTILYVTIPHPAKYHNT 151
            NTS ++ +T+ HP  Y NT
Sbjct: 1901 NTSVVVQITVTHPGSYGNT 1919


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 371 LKAVQVLSGERYDLIKRTMVSSEHH 445
           +K +Q  + +RYD +KR + + +HH
Sbjct: 539 IKRIQDTANDRYDKVKRDLENKKHH 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,664,526
Number of Sequences: 59808
Number of extensions: 411037
Number of successful extensions: 831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)