Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0454.Seq
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    30   2.2  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protei...    28   8.8  

>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical protein
            F25H2.13 protein.
          Length = 994

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 543  TLERNWSLINVRWDEVFKGCVLXP*RRPCWXPESAXFXXTCSVXLLTLDRSSPCSKSMQV 722
            T  R++   ++RWDEVF+        RP + P  A     CS  L + D+     K+++ 
Sbjct: 937  TTLRSYKAESIRWDEVFQRF------RPIFVPHKADLFIACSNVLRSEDKMKYLKKALES 990

Query: 723  HGH 731
              H
Sbjct: 991  KIH 993


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
            protein F25H2.13 protein.
          Length = 994

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 543  TLERNWSLINVRWDEVFKGCVLXP*RRPCWXPESAXFXXTCSVXLLTLDRSSPCSKSMQV 722
            T  R++   ++RWDEVF+        RP + P  A     CS  L + D+     K+++ 
Sbjct: 937  TTLRSYKAESIRWDEVFQRF------RPIFVPHKADLFIACSNVLRSEDKMKYLKKALES 990

Query: 723  HGH 731
              H
Sbjct: 991  KIH 993


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical
           protein T01C4.1 protein.
          Length = 1484

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 489 TCDGASDRDPXGRRCSSWTLERNWSLINVRWDEVFK 596
           TC    DRD   RRC S     NW  + + W   FK
Sbjct: 824 TCRDDQDRDVE-RRCWSGDDMMNWEFLQLEWGFAFK 858


>U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protein
           172, isoform a protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 589 FSKAACCXLEGGHVGXRSPPNXAGL 663
           F  A+CC  + G VG   PP   GL
Sbjct: 140 FQPASCCTCQQGPVGPAGPPGDDGL 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,550
Number of Sequences: 27780
Number of extensions: 311259
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)