Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0454.Seq
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf...    29   3.5  
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf...    29   3.5  

>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 643 DSGXQHGRLQGNNTQPLKTSSQRTLIRLQFLSKVQDEH---LRP-XGSLSEAPSH 491
           DSG   G  Q +  +PLK ++++T  +  FL K  D     L P   S+SE P H
Sbjct: 262 DSGVYFGMNQRSQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLH 316


>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 643 DSGXQHGRLQGNNTQPLKTSSQRTLIRLQFLSKVQDEH---LRP-XGSLSEAPSH 491
           DSG   G  Q +  +PLK ++++T  +  FL K  D     L P   S+SE P H
Sbjct: 262 DSGVYFGMNQRSQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLH 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,490
Number of Sequences: 28952
Number of extensions: 293952
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)