Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0453.Seq
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    27   3.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   3.3  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   5.7  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   5.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.7  

>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 296 DNERTARLDVEFLELRSNSSHDSHRINHVRRIRDFYADLRE 174
           D  R   LDV  ++++  ++H S + +HVR I+ +  ++ +
Sbjct: 127 DFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQ 167


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 83   VINWDETKWNGMRWTHNVR 139
            ++  D+T+WNGMR T  VR
Sbjct: 959  LLETDKTEWNGMRLTGEVR 977


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 671 STPSLSNFNPGYVVPPGTLLVPGAVLRHH 585
           S   L+N    Y+ PPG   +P    +HH
Sbjct: 29  SAKILANVRHTYITPPGQGFLPSDTAKHH 57


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 804 CFPPTLGEPGVFWNPVAHWL 745
           C  PT+   G+ W+P  +WL
Sbjct: 185 CKLPTIDSTGIHWSPDGNWL 204


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -1

Query: 832 FPTKPQPLKVFSANVRGTRCFLEPRCPLANRIRSGLTLPGATSKG 698
           F T P    VFS N  G     +   P  +   S  T PG  S G
Sbjct: 582 FSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTG 626


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 23/78 (29%), Positives = 31/78 (39%)
 Frame = +2

Query: 551 FSFSLRKNEPCHDDATLPRVQVECLGGRHSLD*SSTRTAYSGPLTPENGSFGSCTR*RQA 730
           F+FSL  N     D T P +Q    G         T   ++   T ENG   S       
Sbjct: 592 FNFSLN-NASSTQDTTKPTLQFN-FGSSFG---KPTSNIFNDKKTSENGLASSTVASESK 646

Query: 731 ATNPVSQWATGFQKTPGS 784
            + P S+ ++GF  T GS
Sbjct: 647 PSAPESKPSSGFGNTAGS 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,894
Number of Sequences: 5004
Number of extensions: 71719
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)