Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0453.Seq
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069           29   4.6  
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926...    29   6.0  
01_06_1098 + 34518608-34519546                                         29   6.0  
01_05_0060 + 17742566-17742826,17744132-17744246,17746818-177469...    29   6.0  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    28   8.0  

>03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069
          Length = 177

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 510 NQTLKVRSATFAAAFPSACGKTNLAMMTQHCP 605
           N  +K+ +AT A A PSACG T+  +   HCP
Sbjct: 69  NLGIKI-NATLALALPSACGATHANV--SHCP 97


>03_02_0534 -
           9267297-9267734,9268376-9268649,9268782-9268889,
           9269476-9269567,9269652-9269711,9269812-9269994
          Length = 384

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -1

Query: 820 PQPLKVFSANVRGTRCFLEPRCPLANRIRSGLTLPGATSKGPV 692
           P PLK  S      +  LE     ANR R   TL GA S  P+
Sbjct: 178 PSPLKFISELEPDAKALLEAALMEANREREKRTLKGARSASPL 220


>01_06_1098 + 34518608-34519546
          Length = 312

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 720 YLVQLPKDPFSGVNGPEYAVLVELQSRLCRPPRHSTCTR 604
           Y+VQ+PKD    V  PE A L +  +R  R     +C R
Sbjct: 72  YVVQMPKDKVFRVPPPENARLFQHYTRRARRRARCSCAR 110


>01_05_0060 +
           17742566-17742826,17744132-17744246,17746818-17746993,
           17747323-17747418,17747504-17747782
          Length = 308

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -1

Query: 661 PCRTSIQAMSSPQALYLYPGQCCVIMARFVFPQAEGKAAANVALLTL 521
           PC +S    SSP +L+L P  CC   A    P+A  +A+A+ A  TL
Sbjct: 8   PCSSS----SSPSSLFLAPNPCCWKAA----PRATVRASASAARRTL 46


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 93  GMKLNGMG*DGRTMYVIPFSMGPVGSPLSKIGVEITDSPY 212
           G +  G G    T    PF+  P GSP++  G +  +SP+
Sbjct: 25  GAQTGGFG-QANTTTTNPFAPKPFGSPITAFGAQTGNSPF 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,177,741
Number of Sequences: 37544
Number of extensions: 553479
Number of successful extensions: 1452
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)