Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0453.Seq
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 104 8e-23
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 103 2e-22
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 97 1e-20
SB_3862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7) 28 8.1
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 104 bits (250), Expect = 8e-23
Identities = 64/158 (40%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Frame = +2
Query: 248 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHKPAENEIVXXXXXXXX 412
S VL+ L Q + FV+CLH+VG G WPCDP TII H PA+N I
Sbjct: 354 SHVLKALDQGD-FVKCLHSVGKPLKEGEKDVLWPCDPDRTIITHFPADNYIKSFGSGYGG 412
Query: 413 XXXXXKKCFALRLGSVIARREXXLAEHMLIVG*PNPQGKKRYIRCRFSFSLRKNEPCHDD 592
KKCFALR+ S IA +E LAEHMLI+ NP+GKK+YI F + K
Sbjct: 413 NSLLGKKCFALRIASNIALKEGWLAEHMLIMALTNPEGKKKYIAAAFPSACGKTNLAMLK 472
Query: 593 ATLPRVQVECLGGRHSLD*SSTRTAYSGPLTPENGSFG 706
T+P +V+C+G + +T + PE+G FG
Sbjct: 473 PTIPGWKVDCVGDDIAWM-WFDKTGQLRAINPESGFFG 509
Score = 55.2 bits (127), Expect = 6e-08
Identities = 22/34 (64%), Positives = 31/34 (91%)
Frame = +3
Query: 150 SMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGA 251
+MGPVGSP++KIG+++TDS YVV MR+MTR+G+
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGS 354
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 103 bits (246), Expect = 2e-22
Identities = 78/203 (38%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Frame = +2
Query: 248 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHKPAENEIVXXXXXXXX 412
S VL+ L D FVRCLH+VG G WPCDP+ T+I H P EI
Sbjct: 40 SHVLKALG-DGDFVRCLHSVGGPLHDGKNNVPWPCDPERTLITHFPETREIKSYGSGYGG 98
Query: 413 XXXXXKKCFALRLGSVIARREXXLAEHMLIVG*PNPQGKKRYIRCRFSFSLRKNEPCHDD 592
KKCFALR+ SVIAR E LAEHM+I+G NP+GKK YI F + K
Sbjct: 99 NSLLGKKCFALRIASVIARDEGWLAEHMMILGLTNPEGKKIYIAAAFPSACGKTNLAMLT 158
Query: 593 ATLPRVQVECLGGRHS---LD*SSTRTAYSGPLTPENGSFGSCTR*RQAATNPVSQWATG 763
T+P + EC+G + D T A + PE G FG +NP++ +
Sbjct: 159 PTIPGWKCECVGDDIAWMWFDKDGTLRA----INPECGFFGVAPG-TSFLSNPIAM--ST 211
Query: 764 FQKTPGSPNVGGKHLEGLGFGWK 832
FQK NV K +G F W+
Sbjct: 212 FQKDTIFTNV-AKTSDG-DFWWE 232
Score = 70.9 bits (166), Expect = 1e-12
Identities = 30/40 (75%), Positives = 37/40 (92%)
Frame = +3
Query: 132 MYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGA 251
MYV+PFSMGPVGSP+SKIG+E+TDS YVV MR+MTR+G+
Sbjct: 1 MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRMGS 40
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 97.5 bits (232), Expect = 1e-20
Identities = 72/190 (37%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
Frame = +2
Query: 248 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHKPAENEIVXXXXXXXX 412
S VL+ L D FVR +H+VG G WPCDP+ T+I H PA EI
Sbjct: 170 SHVLKALG-DGDFVRGVHSVGFPLKEGVKEVPWPCDPERTLITHFPATREIKSYGSGYGG 228
Query: 413 XXXXXKKCFALRLGSVIARREXXLAEHMLIVG*PNPQGKKRYIRCRFSFSLRKNEPCHDD 592
KKCFALR+ S IA E LAEHM+I+G NP+GKK YI F + K
Sbjct: 229 NSLLGKKCFALRIASNIAHDEGWLAEHMMIMGLTNPEGKKIYIAAAFPSACGKTNLAMLT 288
Query: 593 ATLPRVQVECLGGRHS---LD*SSTRTAYSGPLTPENGSFGSCTR*RQAATNPVSQWATG 763
T+P + EC+G + D T A + PE+G FG C +NP++
Sbjct: 289 PTIPGWKCECVGDDINWMWFDKDGTLRA----INPESGFFGVCPG-TTFTSNPIAM--KT 341
Query: 764 FQKTPGSPNV 793
FQK NV
Sbjct: 342 FQKDTIFTNV 351
Score = 97.1 bits (231), Expect = 2e-20
Identities = 69/181 (38%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Frame = +3
Query: 123 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAKF*KFYVKTSSSFVVFT 302
GRTMYV+PFSMGPVGSP+SKIG+++TDS YVV MR+MTR+G+ K FV
Sbjct: 128 GRTMYVLPFSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRMGSHVLK--ALGDGDFVRGV 185
Query: 303 QSAPVALRVGPAXXXXXXXXXXXXXXXXXATAVDTAAIVCWARSASL----YVWDQ*SLV 470
S L+ G AT + + ++ L + S +
Sbjct: 186 HSVGFPLKEGVKEVPWPCDPERTLITHFPATREIKSYGSGYGGNSLLGKKCFALRIASNI 245
Query: 471 AXD-XWPNICLSSANQTLKVRSATFAAA-FPSACGKTNLAMMTQHCPGYK*SAWGDDIAW 644
A D W + T + AA FPSACGKTNLAM+T PG+K GDDI W
Sbjct: 246 AHDEGWLAEHMMIMGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTIPGWKCECVGDDINW 305
Query: 645 I 647
+
Sbjct: 306 M 306
>SB_3862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 828 QPNPNPSRCFPPTLGEPGVFWN-PVAHWLTG 739
+P+P P P E G FWN P+ HW TG
Sbjct: 86 KPSP-PELPTPSYAYETGYFWNNPIRHWQTG 115
>SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)
Length = 263
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 341 GRRANPECHRSRLREDNERTARLDVEFLELRSNSSHDSHRIN-HVRRIRDFY-ADLRERR 168
GRRA+PE + L + R E +++S + R+N R R +++ +
Sbjct: 127 GRRADPESNTDNLTKTKRRKRLFGGNQTEPVTDASLNEKRLNERFREHRSVIDSNVEDSA 186
Query: 167 SHRTHREWYHVH 132
S R H E + VH
Sbjct: 187 STRRHHERFQVH 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,868,641
Number of Sequences: 59808
Number of extensions: 597646
Number of successful extensions: 1869
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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