Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0453.Seq
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06340.1 68416.m00731 DNAJ heat shock N-terminal domain-conta...    33   0.31 
At5g20090.1 68418.m02392 expressed protein contains Pfam domain,...    29   2.9  
At3g04190.1 68416.m00443 germin-like protein, putative contains ...    29   3.8  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    29   5.0  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    28   6.6  
At4g23760.1 68417.m03418 expressed protein                             28   6.6  

>At3g06340.1 68416.m00731 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 673

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 719 TWCNFQRTRFPGLMARSTPSLSNFNPGYV-VPPGTLLVPGAVLRHHGKVRFSAS*RKSGS 543
           T+C  Q+++FP   A S P     NP  V     +  +PG+  +H+GK +     RK+ +
Sbjct: 244 TYCFPQQSKFPDQRACSEPHKRPENPPTVSSSKASFPMPGSTAKHNGKRK-----RKNVA 298

Query: 542 ECSAS 528
           ECS S
Sbjct: 299 ECSES 303


>At5g20090.1 68418.m02392 expressed protein contains Pfam domain,
           PF03650: Uncharacterized protein family (UPF0041)
          Length = 110

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 771 FWNPVAHWLTGFVAA*RYLVQLPKDPFSG 685
           FW P+A+W  GFVAA    +Q P +  SG
Sbjct: 21  FWGPIANW--GFVAAGLVDMQKPPEMISG 47


>At3g04190.1 68416.m00443 germin-like protein, putative contains
           Pfam profile: PF01072 germin family; similar to germin
           type2 GB:CAA63023 [SP|P92996] [Arabidopsis thaliana]
          Length = 222

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 790 VRGTRCFLEPRCPLANRI-RSGLTLPGATSKGP 695
           V G  C  +P+C  AN    SGL +PG TS GP
Sbjct: 45  VNGKFC-KDPKCVTANDFYTSGLNVPGNTSTGP 76


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1416

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 132  MY-VIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAKF*KFYVKTSSSFVVFTQS 308
            MY  +P+++  V   +  + ++ T    ++Y+M       AKF  FY  +  SF+ FT  
Sbjct: 1231 MYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYY 1290

Query: 309  APVALRVGP 335
              + + + P
Sbjct: 1291 GMMTVALTP 1299


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 363 WSMMVFLGSQGQPGVPPEPTA*RQRTNCS 277
           W  +VFL SQ  P  PP   A R +  C+
Sbjct: 265 WGKVVFLPSQALPAPPPGHMAIRSKEGCN 293


>At4g23760.1 68417.m03418 expressed protein 
          Length = 187

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 208 GESVISTPIFERGDPTGPIENGITYIVRPSHPI 110
           GE+  ST +  RG PT  +  G+++  R   PI
Sbjct: 130 GETEYSTNLRPRGSPTSQLRRGVSFRSREMRPI 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,571
Number of Sequences: 28952
Number of extensions: 410399
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)