Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0452.Seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   116   4e-27
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    30   0.27 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    29   0.82 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   1.9  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.8  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  116 bits (278), Expect = 4e-27
 Identities = 54/82 (65%), Positives = 64/82 (78%)
 Frame = +3

Query: 261 PALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNXGLGP 440
           P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA N G+ P
Sbjct: 71  PELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEP 130

Query: 441 EKTSFFQALSIPTKISXGTIEI 506
            KTSFFQAL IPTKI+ GTIEI
Sbjct: 131 GKTSFFQALGIPTKITRGTIEI 152



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +1

Query: 73  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 243
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 562 LLXMLNISPFSYGL-CKQVYDSG 627
           LL MLNISPF+YG+    +YD G
Sbjct: 172 LLNMLNISPFTYGMDVLTIYDQG 194


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 267 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA 419
           + KL   + G VG +FT     EV     E+ VQ   AR GA+AP + VIPA
Sbjct: 89  VSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPA 139


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 508 MISIVPFEILVGIERAWKKEVFSGPRPXLWAGMTTDNGAMAP 383
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 311 HEANVALDVWQQFLEGWIVSRWSLMALRIIVFFPMSTILEPR 186
           HE  V  D  +Q    W    W LM + +++F  +  ILEPR
Sbjct: 151 HEEQVWSDKIRQ-ASTW--GTWGLMGINVVLFVVVQLILEPR 189


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 518 VHRYDFNSTX*NLGRDRKSLEERGLLWT 435
           VH YDF++   N  +DR S++   LL T
Sbjct: 28  VHIYDFDNVRLNPWKDRMSVKTNSLLQT 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,960
Number of Sequences: 5004
Number of extensions: 61531
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)