Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0452.Seq
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   127   6e-30
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    32   0.33 
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       29   3.0  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    29   3.0  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    29   3.0  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    28   5.3  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  127 bits (307), Expect = 6e-30
 Identities = 60/86 (69%), Positives = 69/86 (80%)
 Frame = +3

Query: 252 GNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNXG 431
           G NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  V +P  N G
Sbjct: 70  GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129

Query: 432 LGPEKTSFFQALSIPTKISXGTIEII 509
           +GPEKTSFFQAL IPTKI+ GTIEI+
Sbjct: 130 MGPEKTSFFQALQIPTKIARGTIEIL 155



 Score =  106 bits (255), Expect = 1e-23
 Identities = 43/69 (62%), Positives = 60/69 (86%)
 Frame = +1

Query: 46  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 225
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 226 MRKAIKDHL 252
           +RKA++ HL
Sbjct: 61  IRKALRGHL 69



 Score = 34.3 bits (75), Expect = 0.081
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = +1

Query: 556 SHLLXMLNISPFSYGL-CKQVYDSGLFLH---LNLTQQKISCKF 675
           S LL ML ++PFSYGL  +QVYD G       L++T +++  +F
Sbjct: 172 SALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRF 215



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 509 NDVHILKPGDQGGASEA 559
           NDVH++K GD+ GASE+
Sbjct: 156 NDVHLIKEGDKVGASES 172


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 267 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNXG-LGPE 443
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P          
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 444 KTSFFQALSIPTKISXGTIEIITMY 518
                + L +PTK+  G   +IT+Y
Sbjct: 150 MEPQLRKLGLPTKLDKG---VITLY 171



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = +1

Query: 19  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 198
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 199 IVLMGKNTMMRKAI 240
               GKN ++  A+
Sbjct: 65  RFFFGKNNVISIAL 78


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 272 LEGWIVSRWSLMALRIIVF 216
           + GWIV+ W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 272 LEGWIVSRWSLMALRIIVF 216
           + GWIV+ W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 272 LEGWIVSRWSLMALRIIVF 216
           + GWIV+ W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 133 VGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSR 294
           V ADN   +++QQI   +R +   ++ +N  +RK + + +E I+  +   H+SR
Sbjct: 547 VKADN---KKLQQILEEVRQNQSKVLEENVKLRKGMAEAIEKIEEFKRNWHSSR 597


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 541 LVTGLQDVYIVMISIVPFEILVGIERAWKKEVFSGPRP 428
           L+   QDVY+ + S++PF++L+  +R    E+ + P P
Sbjct: 239 LLVPSQDVYLPVHSVLPFQVLIVKQRG--TEIVNMPNP 274



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 295  PLMCGNSFSRAGLFPGGL*WLCASLCFFP*ARYWSHVARYGSAASVAS 152
            P  C  +F+R       + WL  S  F P   Y   + R+ S+ S +S
Sbjct: 1530 PFECQVAFTRRSKIISAVNWLTVSAVFSPVFGYGCEIRRFDSSVSTSS 1577


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 1   LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 114
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 409 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 299
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 363 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGLDCFQVVFDGFAHHCVFSHEHDTG 193
           LC PT       GL   T  Q+C   + T + G     V  DG +   + ++E + G
Sbjct: 733 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 789


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 363 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGLDCFQVVFDGFAHHCVFSHEHDTG 193
           LC PT       GL   T  Q+C   + T + G     V  DG +   + ++E + G
Sbjct: 682 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 738


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 363 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGLDCFQVVFDGFAHHCVFSHEHDTG 193
           LC PT       GL   T  Q+C   + T + G     V  DG +   + ++E + G
Sbjct: 680 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 736


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,638
Number of Sequences: 27780
Number of extensions: 357775
Number of successful extensions: 1075
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)