Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0452.Seq
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 638 CKNSPESYTC-LHRPYENG 585
           C NSPE+ TC +   Y NG
Sbjct: 163 CCNSPENNTCSISNSYTNG 181


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 319 RVNTKPTLPLMCGNSFSRAGLFPG 248
           R +T P    +CG +FSR  L  G
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLLQG 60


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 153 LATDAADPYLATWLQYRAHGKKHNDAQSHQRPPGNNPALEKL 278
           +AT    P + TWL+       H   Q H+ P GN+    K+
Sbjct: 45  MATGFPRPEI-TWLKDGIELYHHKFFQVHEWPVGNDTLKSKM 85


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 70  WKSNYFVKIIQLLDEYP 120
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 381 DELELGLCSPTVCHGPQR 328
           D +E G+  PT C G  +
Sbjct: 361 DAVEYGIIGPTTCMGDHK 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,241
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)