Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0449.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical
           protein M01D1.10 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 119 TNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTH---GVLLQAVGRQR 289
           TNC    S ++TT+L  +  N   K   A FK  L   S+ + GTH    ++L+ +  + 
Sbjct: 223 TNC----SRISTTILTEKEINMFLKHWIAGFKPELEYFSIPKQGTHFNQDIILEGIQYET 278

Query: 290 TGYCQKVLPIKL*THHGRKLRQAHLQKL 373
               +KV  +   T  G  ++ +H  K+
Sbjct: 279 APIERKVRILNKYTRGGADIQMSHESKV 306


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
           protein F54B3.1b protein.
          Length = 3394

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +2

Query: 497 QSVLKAHNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIY 676
           + V  A N   ++    STS  N    DR + GGN     R  W       +   L F  
Sbjct: 178 RKVPSAENIHLSESSAASTSHKNDGDADRAMDGGNLMSIQRGIWSATERHEDQKQLSFAS 237

Query: 677 NRDSTMPWSSIRFVKRLG 730
           ++    P  S+ F+ R+G
Sbjct: 238 DKSYVAPDWSLIFMLRMG 255


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
           protein F54B3.1a protein.
          Length = 3396

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +2

Query: 497 QSVLKAHNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIY 676
           + V  A N   ++    STS  N    DR + GGN     R  W       +   L F  
Sbjct: 178 RKVPSAENIHLSESSAASTSHKNDGDADRAMDGGNLMSIQRGIWSATERHEDQKQLSFAS 237

Query: 677 NRDSTMPWSSIRFVKRLG 730
           ++    P  S+ F+ R+G
Sbjct: 238 DKSYVAPDWSLIFMLRMG 255


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 143 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILL 9
           V++LL ++S R     L  SA S+ T   A S HIA  ++  ILL
Sbjct: 118 VQLLLCNISDRDIFVKLRCSAASNITALPAGSGHIAPKSQMRILL 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,097
Number of Sequences: 27780
Number of extensions: 330109
Number of successful extensions: 1186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)