Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0448.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 45 6e-06
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 43 3e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.006
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 31 0.096
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 29 0.51
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 27 1.6
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 2.1
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 2.7
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 26 3.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 3.6
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 4.8
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 6.3
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 45.2 bits (102), Expect = 6e-06
Identities = 22/75 (29%), Positives = 45/75 (60%)
Frame = +3
Query: 33 PKPPATVFVLDVSYNAVKSGLVDAFCENILDIIRELPKDEQGKSYTRVGFITYSSTVHFY 212
P+P VF++D+S+ ++ SG+V IL+ + +P +++G++ +V FI S +HF+
Sbjct: 327 PQPLVYVFLIDISFVSISSGMVGTASRAILESLDRIP-NKEGRA--KVAFIGVDSALHFF 383
Query: 213 NIKGSLGQAQMLSVA 257
++ +A L V+
Sbjct: 384 SVSPGAEEATQLVVS 398
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +2
Query: 248 VGGDVGDMFVPILEGFLERVEDSGSVLASLLEQIPAMFRENKETETVMLPAVQA 409
V D+ + F+P + L + + + +LLE+ +MF +++ + P ++A
Sbjct: 396 VVSDLEEPFLPRNQDLLLNLRECRQGIENLLERFQSMFATTRDSSNALGPGLKA 449
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 42.7 bits (96), Expect = 3e-05
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 33 PKPPATVFVLDVSYNAVKSGLVDAFCENILDII-RELPKDEQGKSYTRVGFITYSSTVHF 209
PKP VF++DVSY A GL E I +I+ +P D ++ + + +V+F
Sbjct: 289 PKPARFVFMIDVSYEASSKGLPKVAAEAIRNILYGPVPLDPN----VKIAIVCFDRSVNF 344
Query: 210 YNIKGSLGQAQMLSVA 257
+N+ +L Q ML+ +
Sbjct: 345 FNLSPNLEQPHMLAAS 360
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 257 DVGDMFVPILEGFLERVEDSGSVLASLLEQIPAMFRENKETETVMLPAVQ 406
D+ + FVP G S V+ LL+ PA+F++ K E V+ A++
Sbjct: 361 DLENPFVPFSSGLFVDPIASKVVIERLLDSFPAIFQDVKIPEPVVGNALE 410
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.1 bits (77), Expect = 0.006
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 30 LPKPPATVFVLDVSYNAVKSGLVDAF--CENILDIIRELPKDEQGKSYTRVGFITYS 194
L +P TVFV ++S+NA + L AF C +I I LP D Q G++T+S
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSI--RLPTDPQSGRLKGFGYVTFS 415
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 31.1 bits (67), Expect = 0.096
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 393 SMTVSVSLFSLNMAGICSSREASTEP----LSSTLSRNPSRMGTNMSPTSPPTA 244
S+T SVS S +A SS STEP SSTLS + S + TN P ++
Sbjct: 931 SLTSSVSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESS 984
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 28.7 bits (61), Expect = 0.51
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +3
Query: 3 TTEYCRNNTLPKPPATVFVLDVSYNAVKSGLVDAFCENILDIIRELPKDEQGKSYTRVGF 182
T EY + + PP +FV+D AV + A + ++ + LP D VG
Sbjct: 110 TMEYVLSKPVKSPPVFLFVMD---TAVDESELTALKDAVIVSLSLLPPD------AIVGL 160
Query: 183 ITYSSTVHFYNI 218
ITY S + + I
Sbjct: 161 ITYGSLIQVHEI 172
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 24 NTLPKPPATVFVLD-VSYNAVKSGLVDAFCENILDIIRELPKDEQGKSYTR 173
N P+ P F D +++ VK +CEN + ++L + GK + R
Sbjct: 399 NQSPRQPPNAFDADPLAHKKVKIETKSGYCENCCERYKDLERHLGGKHHRR 449
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 342 SSREASTEPLSSTLSRNPSRMGTNMSPTSPPTA 244
SS AS P+S + +RN S+ + SPP++
Sbjct: 139 SSSSASVSPISPSANRNDSKRQASSFRRSPPSS 171
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 81 VKSGLVDAFCENILDIIRELPKD 149
++ GL++AF ENI + ++ P+D
Sbjct: 194 LQQGLINAFAENIEETLKTYPED 216
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 25.8 bits (54), Expect = 3.6
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +2
Query: 185 HLQLDRSLLQHQGQLRPSPNAVGGDVGDMFVPILEGFLERVEDSGSVLASLLEQIPAMFR 364
H+ L+ + L+ P + D+ + ILE L+ + ++ LL++ A+
Sbjct: 106 HIYTALPLVSKEEFLKEHPEFKSSNDHDLMLAILEDELKERQRLSTLKQELLKRKAALIS 165
Query: 365 ENKETETVMLPAVQAGLEALKAADTRRSPVRVPHY 469
ENK A+Q G E L+ RS V V Y
Sbjct: 166 ENKAKRN----ALQKGDEKLQT--FLRSSVPVQEY 194
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 3.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = -2
Query: 459 TRTGDRRVSAAFKASRPA*TAGSMT---VSVSLFSLNMAGICSSREASTEPLSSTLSRNP 289
T G ++ K + P GS T + S S+NM +S P STL NP
Sbjct: 268 TPQGPLMINDLGKTTAPPPPHGSTTPLPAAASYTSMNMKQSSASHPVLQPPAPSTLQFNP 327
Query: 288 SRMGTNMSPTSPP 250
S + +P+ PP
Sbjct: 328 S--PSPAAPSYPP 338
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 342 SSREASTEPLSSTLSRNPSRMGT 274
+ RE S+ SST+SR PS GT
Sbjct: 38 NQRENSSRSGSSTISREPSSSGT 60
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 275 VPILEGFLERVEDSGSVLASLLEQIPAMFRENKETETVML 394
+P +E + ++ S SVL + E AM + +KET + +L
Sbjct: 689 LPCVESSDKSIKASVSVLPDIYEDSDAMSKASKETRSEVL 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,142
Number of Sequences: 5004
Number of extensions: 34585
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -