Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0447.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...   107   1e-24
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   4.1  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   9.4  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   9.4  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score =  107 bits (257), Expect = 1e-24
 Identities = 59/101 (58%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
 Frame = +1

Query: 337 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTVL- 513
           MSE  +A++ +EIWKI++L+K L    GNGTSMI+LIIPP +QISR S MLA+E+GT   
Sbjct: 1   MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASN 58

Query: 514 ISSHV*IVSPVLGAITSVQHRLKLYTKVPPNGLVISXGTIV 636
           I S V  +S VL AITS + RLKLY KVP NGLVI  G ++
Sbjct: 59  IKSRVNRLS-VLSAITSTRERLKLYNKVPDNGLVIYCGEVI 98


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 316 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTS 432
           LN+  N +S    SSAD  +E W   K I S + +R   TS
Sbjct: 10  LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS 50


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 336 FVSLFI*LINHKHYIC-INN*NNVF-AQH 256
           F + F+ L +HK+YIC + N NN++  QH
Sbjct: 197 FSTKFVALSSHKNYICGLTNDNNLYILQH 225


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 205 QTALI*FEPDGRDTSRLRSHFLVYIYVCGCS 113
           Q   I FEP   D  +LR  +  Y  + GC+
Sbjct: 36  QQVAIKFEPRRSDAPQLRDEYRTYKLLAGCT 66


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 352 SADRNVEIWKIKKLIKSL 405
           SAD+ ++IW  +KL+KS+
Sbjct: 155 SADKLIKIWNGEKLVKSI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,411
Number of Sequences: 5004
Number of extensions: 56248
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)