Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0447.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47880.1 68418.m05915 eukaryotic peptide chain release factor...   137   7e-33
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...   133   1e-31
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...   130   1e-30
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    29   2.0  
At5g56240.1 68418.m07018 expressed protein                             29   2.7  
At4g14480.1 68417.m02233 protein kinase family protein contains ...    29   3.5  
At3g59610.1 68416.m06651 F-box family protein / jacalin lectin f...    28   6.1  

>At5g47880.1 68418.m05915 eukaryotic peptide chain release factor
           subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic
           peptide chain release factor subunit 1-1 (eRF1-1)
           (Eukaryotic release factor 1-1) (Omnipotent suppressor
           protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis
           thaliana}, eukaryotic release factor 1 homolog
           GI:1155261 from [Arabidopsis thaliana]; contains Pfam
           profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2,
           PF03465 eRF1 domain 3
          Length = 436

 Score =  137 bits (331), Expect = 7e-33
 Identities = 70/101 (69%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
 Frame = +1

Query: 337 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTVL- 513
           M +++  D+N+EIWKIKKLIKSLE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GT   
Sbjct: 1   MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60

Query: 514 ISSHV*IVSPVLGAITSVQHRLKLYTKVPPNGLVISXGTIV 636
           I S V   S VLGAITS Q RLKLY +VPPNGLV+  GTIV
Sbjct: 61  IKSRVNRQS-VLGAITSAQQRLKLYNRVPPNGLVLYTGTIV 100


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score =  133 bits (321), Expect = 1e-31
 Identities = 68/98 (69%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
 Frame = +1

Query: 346 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTVL-ISS 522
           +  +D+N+EIWKIKKLIK LE ARGNGTSMISLI+PP+DQ++RV+KMLADE+GT   I S
Sbjct: 3   DQESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASNIKS 62

Query: 523 HV*IVSPVLGAITSVQHRLKLYTKVPPNGLVISXGTIV 636
            V   S VL AITS Q RLKLY KVPPNGLV+  GTIV
Sbjct: 63  RVNRQS-VLSAITSAQQRLKLYNKVPPNGLVLYTGTIV 99


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score =  130 bits (313), Expect = 1e-30
 Identities = 71/101 (70%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
 Frame = +1

Query: 337 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTVL- 513
           M+EE  AD N+EIWKIKKLIK LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GT   
Sbjct: 1   MAEE--ADTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 58

Query: 514 ISSHV*IVSPVLGAITSVQHRLKLYTKVPPNGLVISXGTIV 636
           I S V   S VL AITS Q RLKLY KVP NGLV+  GTIV
Sbjct: 59  IKSRVNRQS-VLSAITSAQQRLKLYNKVPTNGLVLYTGTIV 98


>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 397 KSLEMARGNGTSMISLIIPPKDQISR 474
           KS+   RGNG S   + +PP D +SR
Sbjct: 561 KSISDNRGNGFSAAPIAVPPSDNLSR 586


>At5g56240.1 68418.m07018 expressed protein 
          Length = 986

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 348 IVGRSKCRNMEDKETYKEFGNGQRKWNIDDIPDHSTXGSNLESIKDVG 491
           I G++ C+  ED+    E G G     +D IP     GS L S +D+G
Sbjct: 668 IYGQTSCK--EDERFDSEVGQGSLFVEVDTIPIPGPPGSFLPSPRDMG 713


>At4g14480.1 68417.m02233 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 487

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 328 RNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 489
           +N+  E    D+++ + K+K L KSLE  R   + +I  +   K++ SR  ++L
Sbjct: 407 KNQEGEVVGFDKDLVLEKLKVLKKSLEHQRARVSIIIEALSGDKEEKSREEELL 460


>At3g59610.1 68416.m06651 F-box family protein / jacalin lectin
           family protein contains Pfam profile PF01419:
           Jacalin-like lectin domain
          Length = 521

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 337 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQIS 471
           + +E    RN+EIW  K+ IK+ +       +++S+++P    +S
Sbjct: 251 LEQEIYNTRNIEIWVTKETIKNGDGEAVEWVNLMSVLVPEWSSLS 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,894
Number of Sequences: 28952
Number of extensions: 290708
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)