Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0446.Seq
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.6  
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   2.7  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   3.6  
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)           28   6.3  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)                28   8.3  
SB_36387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               28   8.3  

>SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 260 DNADLYGEEVTKDYQRSYEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPAFYQLYN 439
           DN++ Y + + K  Q  YE FA+R L +     D    +PS     Q +L     Y LY+
Sbjct: 143 DNSEEYIDFLLKSEQSLYEDFAKRFLESGYFDCDLGKSVPSVHILRQDALSAIPIYALYH 202

Query: 440 R 442
           +
Sbjct: 203 Q 203


>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 183 PFGGTERMSSHKCQG-ILLFHSFLRCASCSS 94
           PF  +    SH C+G I   H F RCA CS+
Sbjct: 221 PFCASAFTRSHHCRGHINSVHKFFRCAICSA 251


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 24  YSPIKTGYYPLMLTKFTPFAQRPDYYNLHTEENYERVRFL 143
           Y P KT    L   K T  A RP Y NL +   Y R R+L
Sbjct: 99  YVPWKTALNALSYLK-TVLANRPSYGNLQSCPKYNRFRYL 137


>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
          Length = 826

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 186 GPFGGTERMSSHKCQGILLFHSFLRCASC 100
           GP  G +R S H+CQ +L+  + LRC  C
Sbjct: 788 GPTDG-QRPSQHQCQILLMDSAKLRCLCC 815


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 295 RLPTFLRSICAPCARCC 345
           R+P F R +CA  ARCC
Sbjct: 816 RMPEFRRELCAIFARCC 832


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 616  VLNPSLLKSPLFPASNSKVPKNVGKLT 536
            +++P    S LF AS++  PKNVG+L+
Sbjct: 1329 LISPVARASSLFAASSTPPPKNVGRLS 1355


>SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)
          Length = 632

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 27  SPIKTGYYPLMLTKFTPFAQRPDYYNLHTE--ENYERVRFLDTYE 155
           SP+ T   P +  K TP   RP+ Y +     + +E +R LD  E
Sbjct: 118 SPLSTKKNPKVSFKNTPVRHRPERYKIELPQLDTWEEIRCLDEEE 162


>SB_36387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +2

Query: 260 DNADLYGEEVTKDYQRSYEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPAFYQLYN 439
           D+   YG ++ + + RS ++  R       +  DK+ F   ++DF    + D +   L +
Sbjct: 35  DDTIHYGSDLEQHWWRSIDLLTRVGQAGIALNPDKFQFAERSVDFAGFRVSDTSIEPLLD 94

Query: 440 RIVEYIVEFKQYLKPYTQ 493
           R  + +V  +Q L  Y Q
Sbjct: 95  R-RQMLVRPRQPLTNYAQ 111


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 379 RHESVLVEWHRRST*HTARKYFVRTLVI 296
           ++E V+ EW ++ T   A K++VR L I
Sbjct: 635 KYEKVMEEWRKKMTHFLATKFYVRHLFI 662


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,243,420
Number of Sequences: 59808
Number of extensions: 436243
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)