Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0446.Seq
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 29 3.9
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P... 29 3.9
At1g23710.1 68414.m02993 expressed protein 28 5.1
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 28 6.8
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 6.8
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 6.8
At5g07360.1 68418.m00840 amidase family protein low similarity t... 27 9.0
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 27 9.0
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 160 HSFSSSKRTTLKPSDKKLISTTRKPLTSSATTAR*CRS---VWRRSHKRLPTFLRSICAP 330
H+ ++R PS L+ +R A++A R + + S RL +I AP
Sbjct: 150 HNSPVNQRVRRSPSMSVLLVRSRSDSDIEASSAEKQRKEEMLGKTSKSRLTRTASAIGAP 209
Query: 331 CARCCAY 351
CAR C Y
Sbjct: 210 CARICPY 216
>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 783
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 84 QRPDYYNLHTEENYERVRFLDTYE-KTFVQFLQKDHFEAF 200
Q+P NLH EE Y+ R + E +F++FL+K AF
Sbjct: 41 QKPICSNLHFEEYYKEQRIVKAQEWDSFMEFLRKPLPAAF 80
>At1g23710.1 68414.m02993 expressed protein
Length = 295
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 154 RRHSFSSSKRTTLKPSDKKLISTTR--KPLTSSATTAR*CRSVWRRSHKRLPTFLRSICA 327
R S SSS T + +DKK+I+ + K TS+++ + + + +H++L R++
Sbjct: 207 RTRSSSSSSSTAAEENDKKVITEKKKGKEKTSTSSETKKKTTTTKSAHEKLYMRNRAMKE 266
Query: 328 PCARCCAYAIRQVHFHA*CNGL 393
+QV F NGL
Sbjct: 267 EVKHRSYLPYKQVGFFTNVNGL 288
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 655 TLVGAPLPPWTWLVLNPSLLKSPLFP 578
T VGAP+ P + + PS++++PL P
Sbjct: 198 TCVGAPIGPTGFPIRGPSIVRAPLEP 223
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 132 VRFLDTYEKTFVQFLQKDHFEAFGQKIDFHDPKAINFVGNYGKIMQICMEKKSQKITN 305
+R + YE + +H E QK +F V NY ++Q CM S KI N
Sbjct: 51 IRIAEGYE--MASRVAVEHLERIAQKFEFD-------VNNYEPLVQTCMTTLSSKIVN 99
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 132 VRFLDTYEKTFVQFLQKDHFEAFGQKIDFHDPKAINFVGNYGKIMQICMEKKSQKITN 305
+R + YE + +H E QK +F V NY ++Q CM S KI N
Sbjct: 127 IRIAEGYE--MASRVAVEHLERIAQKFEFD-------VNNYEPLVQTCMTTLSSKIVN 175
>At5g07360.1 68418.m00840 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 659
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 196 PSDKKLISTTRKPLTSSATTAR*CRSVWRRSHKRLPTFLRSI 321
PSD KL+ + P S R C+++W+ +++ R I
Sbjct: 50 PSDSKLLCSRLLPCEPSIEMVRNCKNLWKLLDRKVSVPCRKI 91
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 664 LVQTLVGAPLPPWTWLVLNPSLLKSPLFPASNSKVPKNVGKLTTL 530
LV L+ +PP+ + +L P S S++P G LT L
Sbjct: 163 LVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLTNL 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,026
Number of Sequences: 28952
Number of extensions: 307551
Number of successful extensions: 813
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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