Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0445.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 109 3e-25
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 82 6e-17
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 28 1.1
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.0
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 26 4.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 4.5
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 26 4.5
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 26 6.0
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 26 6.0
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 25 7.9
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 7.9
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 109 bits (263), Expect = 3e-25
Identities = 45/93 (48%), Positives = 65/93 (69%)
Frame = +1
Query: 265 RLEKDAKRHWDLFYKRNETKFFRDRHWTTREFQELINFDPEQQIVYLELGCGVGNMIFPL 444
+ +K++K+ WD FYKRNET+FF+DRHW REF + + LE+GCGVGN+++PL
Sbjct: 14 KYKKESKKSWDKFYKRNETRFFKDRHWLDREFDCYFGLPDKLPLTILEVGCGVGNLVYPL 73
Query: 445 VEEGFTNFFFYACDFSPRAVELSKRNSLYDKNR 543
+E N Y CDFSPRA++ K++S Y++NR
Sbjct: 74 LEVQ-PNLKIYCCDFSPRAIDFVKKHSCYNENR 105
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 82.2 bits (194), Expect = 6e-17
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 8/96 (8%)
Frame = +1
Query: 271 EKDA-----KRHWDLFYKRNETKFFRDRHWTTREFQELINFDPEQ--QIVYLELGCGVGN 429
EKDA +R+WD FY +NE KFF +R W +EF EL++ E + LE+GCG GN
Sbjct: 71 EKDAYMTHPERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEIGCGAGN 130
Query: 430 MIFPLVEEG-FTNFFFYACDFSPRAVELSKRNSLYD 534
I+P+++E +N +A D+S +A+++ K+N LYD
Sbjct: 131 TIWPILKENKNSNLKIFAVDYSEKAIDVVKQNPLYD 166
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +1
Query: 376 FDPEQQIVYLELGCGVGNMIFPLVEEGFTNFFFYA 480
+ ++ ++++GCG G +++ L+ EG+ + F A
Sbjct: 271 YSSNKEFSFVDVGCGNGLLVYLLLMEGYNGYGFDA 305
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 107 IKNRIKMETDIPAHVEETSSSDTFVHRLKELS 202
+K+R +TDI + +E T +S VH+ +E+S
Sbjct: 108 LKSRWDSQTDILSQIESTKASLAEVHKAEEIS 139
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +1
Query: 310 RNETKFFRDRHWTTREFQELINFDPEQQIVYLELGCGVGNM---------IFPLVEEGFT 462
+ + +FF W+ + + + +N DP+ + +E+ G+ + PL+++ F
Sbjct: 463 QEQKEFFSAIEWSGQLYPDTVNLDPDMCMANVEVSIAKGSFVIQSHINGRVIPLIKQRFE 522
Query: 463 NFFFYACDFSPRAVEL 510
+ F C P++++L
Sbjct: 523 S-FATECFIRPQSLKL 537
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 83 HNLDKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQ 232
H L V+Y K+R ++E +H +T S F + K + E ++ + ++
Sbjct: 58 HRLSSVSYAKSRTRLELTSSSHGSDTRS---FNDKTKNVHLERVEKIASE 104
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 57 FKTFNSFNCTISIKLHILKTVSRWKPIFLRMLKKQAAVTHSFT 185
FK+ +F+C +I+ + KT + K F +L+ T+S T
Sbjct: 707 FKSVYAFSCLFNIQDDVFKTFEKLKDTFETVLENLPYFTNSET 749
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 232 KYTSCTRSKATRLEKDAKRHWDLFYKR 312
+Y+ CT K R D +R W L+ R
Sbjct: 257 RYSPCTHQKRIRSVSDFERRWKLWRSR 283
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +1
Query: 256 KATRLEKDAKRHWDLFYKRNETKFFRDRHWTTREFQEL 369
K +L + W +YK+ K D +W +E + L
Sbjct: 290 KVKQLALEDSSRWTKYYKKVFEKILNDENWVHKEAKRL 327
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 160 KQQ*HIRSQAERTVTRRNKALTKSKYTSCTRSKATRLE 273
K++ HI+ A+ + +NK L +K+T A +LE
Sbjct: 97 KKERHIKISADTFLPLKNKPLITTKFTVLKNRNAVQLE 134
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 248 VQDVYFDFVRALFLLVTVLSACERMCHCC 162
V+ + +F RA F L++ +ACER+C C
Sbjct: 330 VKGLQSEFQRA-FRLMSENNACERLCKIC 357
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 355 EFQELINFDPEQQIVYLELGCGVGNMIFPLVEEGFTNFFFYACDFSPRAVELSKRNSL 528
E ++NF + + +L G+G F V+ G + F + + +P +VE +R +L
Sbjct: 234 EKARVLNFSYIKDEIIADLYAGIGYFTFSYVKAGASTVFCW--EINPWSVEALRRAAL 289
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 155 ETSSSDTFVHRLKELSQEEIKLLQNQNTRL-VPEAKRLDWKKMLNAIGIYFTKETKQN 325
ET S T++ K +K LQ Q T + PE +R+ W+ + +I K K N
Sbjct: 87 ETRSGGTYIPPAK------LKALQAQLTDVNTPEYQRMQWEALKKSINGLINKVNKSN 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,921
Number of Sequences: 5004
Number of extensions: 45851
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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