Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0445.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 154 FNMRRNIGFHL 122
           FN+RR +G+HL
Sbjct: 207 FNLRRRLGYHL 217


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 185 CERMCHCCLF 156
           C  +CHCC F
Sbjct: 743 CFALCHCCDF 752


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 379 DPEQQIVYLELGCGVGNMIFPLVEEGFTNFFFYACDFSPRAVEL 510
           DP   IVY+    G   +++   +E F        D+ P+ +++
Sbjct: 198 DPVNTIVYMADDKGDALIVYQNSDESFHRLTSNTFDYDPKYIKM 241


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 355 EFQELINFDPEQQIVYLELGCGVGNMI 435
           E +EL  F   + +  L  GC +G+MI
Sbjct: 254 EREELEQFAENEDLEELCRGCNLGHMI 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,145
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)