Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0444.Seq
         (497 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.2  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 VCEXLRSVPRQTISVCACAQDQAPE 314
           +C+  +S  +QT+ +C    ++ PE
Sbjct: 294 ICDSAKSESQQTVFLCYKLMEKFPE 318


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 323  NLRNPLDPHRIPGGRLDLRVKFWVPPHLLINE 418
            NLRN    H+      +L+ +FWV     I E
Sbjct: 1259 NLRNQNLSHQAKNLDSNLKYEFWVTAATTIGE 1290


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 420 GSLMSR*GGTQNLTRRSSRPP 358
           GSL+S  G T N +  S  PP
Sbjct: 55  GSLLSPSGNTPNKSSTSPYPP 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,951
Number of Sequences: 336
Number of extensions: 2297
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)