Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0444.Seq
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   1.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   3.6  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   4.8  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   8.4  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    25   8.4  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 128 VKFNKSGRKIFSLMNLTHVTIVYLTRAKYLFKKVLLNSL 12
           + F K   ++F   N  + TI+Y TR K    + LLNSL
Sbjct: 344 LSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSL 382


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 390 QNLTRRSSRPPGMRCGSRGFRKLSHXPGPDP 298
           +N TR+S +P   +  SRG RK       DP
Sbjct: 153 RNATRKSKKPSASKDTSRGVRKSKAGAPSDP 183


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 418 FVDEQVRGHPELDAEV*PSSGYAVRIEGVPQVKPXS 311
           +  EQV  HP + A       Y VRI+GV  VKP S
Sbjct: 141 YAAEQVCHHPPISAYFYLCPEYKVRIDGV--VKPRS 174


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 301 SWAHAQTEIVCLGTDLNXSHTFSRH 227
           SW +AQ  ++ +G + N  + F RH
Sbjct: 71  SWTYAQLRVMRVGGNENARNYFKRH 95


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 101 IFSLMNLTHVTIVYLTRAKYLFKKVLL 21
           I  ++NL HVT+V L  A  + + VLL
Sbjct: 40  ILGIVNLFHVTLVVLFSALTIIEGVLL 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,918
Number of Sequences: 5004
Number of extensions: 38481
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)