Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0444.Seq
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               56   2e-08
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   8e-07
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)               29   1.6  
SB_6928| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)                   28   3.7  
SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)           28   3.7  
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)          28   3.7  
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  
SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   27   6.5  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 36/74 (48%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
 Frame = +2

Query: 266 EADYFGLRVCPGSGPGXWLNLRNP----LDPHRIPGG--RLDLRVKFWVPPHLLINEPTR 427
           E +YFGL+ C       WLNLRNP    L PH +PG   RL L VKF+V P  L  E TR
Sbjct: 38  EKNYFGLKYCVND-TNVWLNLRNPVLTQLRPH-LPGKPYRLRLEVKFFVAPKELQQEETR 95

Query: 428 HQFYLHAKLDLIEG 469
            QFY   K  + EG
Sbjct: 96  WQFYFCLKNQISEG 109


>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +2

Query: 245 RXIEIGAEADYFGLRVCPGSGPGXWLNLRNPLDPHRIPG---GRLDLRVKFWVPPHLLIN 415
           R  ++ AE DYFGLR    +G   W+NLRN L     PG     L+LRVK++V    L+ 
Sbjct: 442 RKHDLSAEVDYFGLRYVQ-AGDARWINLRNSLREQLSPGVLGSALELRVKYFVNYSQLLL 500

Query: 416 EPTRH 430
           E TRH
Sbjct: 501 EETRH 505


>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
          Length = 573

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 377 RVKFWVPPHLLINEP-TRHQFYLHAKLDLIEGSL 475
           RVK++V    L+ +  TRH +YL  + D++EG +
Sbjct: 298 RVKYYVENICLLQQQSTRHLYYLQLRKDVLEGGI 331


>SB_6928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 146 HFERKYVKFNKSGRKIFSLMNLTHVTIVYLTRAKYLFKKVLLNSLCEM 3
           H  ++Y++F KS   I SL N   V+ VY    +YL      NS+  +
Sbjct: 41  HIGQQYLQFTKSANSITSLPNRPTVSPVYQIGQQYLQFTKSANSISSL 88


>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
          Length = 442

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 332 NPLDPHRIPGGRLDLRVKFW-VPPHLL---INEP 421
           NP D H I  G  D RV  W +P H L   I+EP
Sbjct: 24  NPFDDHMIATGSEDARVMIWQIPEHGLHSNISEP 57


>SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)
          Length = 334

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 209 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 63
           W+      H  RL + P  GQH      K+NK G  +   L  +T +T V
Sbjct: 171 WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 220


>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +2

Query: 263 AEADYFGLR-VCPGSGPGXWLNLRNPLDPHRIPGG-RLDLRVKFWVP-PHLLINEPTRHQ 433
           AE +YFGLR +    G   WL     +              VKF+   P  L  + TR+Q
Sbjct: 44  AEKEYFGLRYIDEKDGQFNWLEGDRSIKRQMGKAPLHFYFAVKFYPENPTTLREDITRYQ 103

Query: 434 FYLHAKLDLIEGSL 475
           F L  + DL++G +
Sbjct: 104 FVLQLREDLLKGRI 117


>SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)
          Length = 133

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 209 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 63
           W+      H  RL + P  GQH      K+NK G  +   L  +T +T V
Sbjct: 17  WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 66


>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 332 NPLDPHRIPGGRLDLRVKFW-VPPHLL---INEP 421
           NP D H I  G  D RV  W +P H L   I+EP
Sbjct: 88  NPFDDHMIATGSEDARVMIWQIPEHGLHSNISEP 121


>SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 214 AFGSTLISKITELG*LTNHILVNISNENT*NLI 116
           A GS L S    LG + NH+ + + ++ T NL+
Sbjct: 4   AIGSQLFSPFRALGYIANHVPLAVQSQGTENLV 36


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 168 SQPNSVILEIKVDPNAIGQECLEKVCEXLRSVPRQTISVCACAQDQAPEXGLTCGTPSIR 347
           S+P +  L++   PN + +   + + E +  +  +  S      +   E G +CG PS+R
Sbjct: 371 SKPATSNLDVATVPNCVNKNVSDNITEEISDISSELDSGSKSEPNSGDEEGGSCG-PSLR 429


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 210 NAIGQECLEKVCEXLRSVPRQTISVCACAQDQAPEXGLTC 329
           N IG E    VC  ++  P  TISV      Q     LTC
Sbjct: 213 NNIGSEASGTVCLTVQYAPNATISVNTTLVCQGDHVALTC 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,217
Number of Sequences: 59808
Number of extensions: 318803
Number of successful extensions: 630
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)